Query= MSMg01no447_p03.b1 MSMg01no447_p03.b1 CHROMAT_FILE:
MSMg01no447_p03.b1 PHD_FILE: MSMg01no447_p03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:01 2005
(489 letters)
>mm_chr15_100138628_100139516
Length = 889
Score = 667 bits (345), Expect = 0.0
Identities = 461/533 (86%), Gaps = 59/533 (11%)
Strand = Plus / Minus
Query: 4 ggaattcttataggttcctcagcgt---ggattatgaaatcatctatttgtctatatagc 60
|||||||||||||| || ||| | | |||| |||||||||||||||||||||||||
Sbjct: 886 ggaattcttataggatcatca---ttaagaattaggaaatcatctatttgtctatatagc 830
Query: 61 atcactacaagatatcttcatttttctgcagagatctgctcaaaag-gggtgggctaata 119
|||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct: 829 atcactgcaagatatcttcatttttctgcagagatctgctc-aaagtgggtgggctaata 771
Query: 120 cctagtgattattatatatgtttaata--------------------gcaggactctttc 159
||||||||||||||||||||||||||| |||||| ||||||
Sbjct: 770 cctagtgattattatatatgtttaataacaggaaaagcatattaatggcaggaatctttc 711
Query: 160 ctaaaatgaaattctcctgggccttgcctcaagaagcaaatccgtcaatggctttaacag 219
||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 710 ctaaaatgaaattctcctgggccttgcctgaagaagcaaa----tcaatggctttaacag 655
Query: 220 tccatggcagaaccatctcaggaagatcacctgctagtgtttagcttctcctggatggct 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 tccatggcagaaccatctcaggaagatcacctgctagtgtttagcttctcctggatggct 595
Query: 280 cctggcattgaaactttaaaaaaacaaacaaacaaaacaggaaccttttaattcactagt 339
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 594 cctggcattgaaactttaaaaaaacaaacaaacaaaacacgaaccttttaattcactaac 535
Query: 340 aaattgttcccaggcactggctggaagtctgtgtagacaccagagctg------------ 387
||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct: 534 aaattgttcccaggcactggctgcaagtctctgtagacaccagagctgcatgtagaagga 475
Query: 388 -------aatctacaggagccacttcctagactgaatggagttgttttaaagattgcatt 440
|||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 atggaggaatctataggagccacttcctagactgaatggagttgttttaaagattgcatt 415
Query: 441 atttcattactatgcaccaccactgccct----gcggccactgtcactcttaa 489
||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 414 atttcattactatgcaccaccactgccctatgagcg----ctgtcactcttaa 366
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space: 421041
Effective search space used: 421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no447_p03.g1 MSMg01no447_p03.g1 CHROMAT_FILE:
MSMg01no447_p03.g1 PHD_FILE: MSMg01no447_p03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:01 2005
(276 letters)
>mm_chr15_100018985_100019660
Length = 676
Score = 443 bits (229), Expect = e-129
Identities = 232/233 (99%)
Strand = Plus / Plus
Query: 1 cctggaactgggttgcagatggctgtgagccttgctattggtgctagaaattgaacccag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctggaactgggttgcagatggctgtgagccttgctattggtgctagaaattgaacccag 260
Query: 61 gtcctgaaagagcaacaggtgccctcctaaggaccagctccgtagcctccagtgttgctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcctgaaagagcaacaggtgccctcctaaggaccagctccgtagcctccagtgttgctc 320
Query: 121 tctctgggattgccttctgaggcctcgtggctgagaccgagagcagagcagtttgagaac 180
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctctgggattgcctcctgaggcctcgtggctgagaccgagagcagagcagtttgagaac 380
Query: 181 actgacagctagcgaagcttgtgtgagtgaaccacgcctggatatttactttt 233
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actgacagctagcgaagcttgtgtgagtgaaccacgcctggatatttactttt 433
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 676
Length adjustment: 9
Effective length of query: 267
Effective length of database: 667
Effective search space: 178089
Effective search space used: 178089
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
