BAC Information

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BAC

Clone NameMSMg01-448D18
Chromosome15 (Build37)
Map Location 79,829,659 - 79,830,202
singlet/doubletsinglet
Overlap genePdgfb
Upstream geneTriobp, H1f0, Gcat, Galr3, LOC100042603, Ankrd54, Eif3s6ip, 1700088E04Rik, Polr2f, Sox10, LOC100041655, Pick1, Slc16a8, Baiap2l2, Pla2g6, Maff, 4732495E13Rik, Csnk1e, LOC675798, LOC100041676, Kcnj4, Kdelr3, Ddx17, Dmc1, 4933432B09Rik, Pgea1, Tomm22, Josd1, Gtpbp1, Unc84b, Dnalc4, Npcd, Nptxr, Cbx6, LOC100042748, Apobec3, Cbx7
Downstream geneRpl3, Syngr1, Map3k7ip1, Mgat3, EG666948, Smcr7l, Atf4, Rps19bp1, Cacna1i, Enthd1, Grap2, AW544981, Tnrc6b, Adsl, LOC625672, Rutbc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-448D18.T7 (MSMg01no448_d18.b1)MSMg01-448D18.TJ (MSMg01no448_d18.g1)
ACCAG536497AG536498
length7331,129
length of high quality
(start - end)		550 (46 - 595)---
definitionCHROMAT_FILE: MSMg01no448_d18.b1 PHD_FILE: MSMg01no448_d18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:26 2005CHROMAT_FILE: MSMg01no448_d18.g1 PHD_FILE: MSMg01no448_d18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGGTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCG
CGGAATTCCAAAACTTAGCACTGGCCTAGGCTCTACTAGAGATGAACCTG
GAGGCCAGTCCCGCAATATTCTTAACTTTCCGGTTCTAACACTTAAAGAG
TTCTTCCTGCGTGGGGGCTGGAGAGGTGGCTCAGAAGGTGAAGAGCATTG
GCTGCTCTTCCAGAGGACCCAAGTTCAATTCCCAGCACCCACAGGGCAGC
TCCCAGTTGTCTACAACTCCAAGAGCTGACACCCTCACACAGACATACAT
GCAGGCAAAACACCAATGCACAGAAAATAAAAATAAATAAGTTAGCCAGA
CTGCCAGGCTGAGGTTGGACTATGTGACCGGAAATCTGAGCATCTTTAGA
CTTCGGGTACTTCCGCTACACAGAGAAAGGAGCCTCTGAGATGTTTCCAA
CTCAAACCGAACTGCCTGACCCTTGCAGAATCAGACATGCACTCCTCTGG
TGGATGCGTGAACGTCAGACCCACTCTCCACATCCCAGCTGTATGGATGC
TCAGCCTTTACTTGTGTATCTCCAGGAGATGTTGTGAGTGAAGGGGGCTG
GTTGGTAGTGAGGCCAGGCGCTGCACCCTCCTTTAGGGCCCCGAAGAATC
TAGATCGTCTCTCGTGATGACAAATGGCCCTAATTAATTTTTCCCAATAA
CATGTTATTTGCTCCCCATTTAAGCCTTTTTCG

TCCTCTCCGTTACCCTAGCGTTATCCCCCCCCAGAAAACACAGTACCTCC
GCCCTATATAGAGTGACGGCCGCACACAAGATTCGCCCCCTCCCGGCAGC
GCGCTAAGCNCCAGCAAGGAGGAAGAGCGGGGAGCGGAANGTTTATAGTT
GACTACGCGAGGCTAACGTATGCGCCCGAATCGATGGCCACTCTTCGTCT
TTCACTCTCTTTATCGTTCTACTTCCGCCGCCTATCCGTTCCTCCCTCCT
CTATTTCGTTCTACGCTGCGCCGTTGTAGGTCCTGTACGCGCGGTTCGAG
AGGAGATCCCACTTTATTCGTCCCGCTTCTCTCCTTTCGCCGCTTCGTGT
TTCCGATCGCTCGCCCTCCTGCGTTATACTGTGGTAGGGAGAGAGAGAAT
CAGTTGCCTCGTGCCGTGTTTGATGTTTGTCGCCCAAATTATTAGTGCGT
TCTTTTCGGATTACTACTATCCACCTCCGCCTATCACGTCTAATTCATAT
CCGCTACAGGCCGTGTTGCGTTACGCTCGTGTGGTTGCAACTGTCCGCCT
TTGGACGCGCAGACGTGTTTTATTATACCGCATGCCGCCGTTTCTCCGCC
ACGCTTTCTTCCGAGAGCTACGTGGTATGTGAAGTGATGGAAGGCGCGAG
CCTGTGCGATCTACCATGCCGCCGCTCGCCCACCCTCAACTATGTGCACC
CATCCACTACTTTAAAATTATCCGCCCGGATTATAGATTATGAGCCCTTT
ATAGCGCCCAACACCAAAGATGAATTCACTACCGTATCACGCCCGGAATC
AGCAGTGTTGTGGCGCTTTTATGTCGACGCCGTGTACTATATCGTCGTGT
ACGGTGCACGACTATGCTTGTGATTGTAGTGGCGGGTTGGAGAGACGCCG
TTTTTGTCCCGATGGCGTATTTCTAAACCACTGTATGAGAATATATATGT
GACGTCGTTCGCAACGACATTTATCTGCGCATAGATTATCTATACGTAAC
CGAATCGGCGTCGCCCGATTATACTGCATCTTTGTGGTGATTTGGCGCGT
CGGCCGTGCCCCTTCGGCTCCTGCATTTATATTCGCACGTCCCTGTAATT
ATATGCCGATACAGATTTTTCCTACATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no448_d18.b1 MSMg01no448_d18.b1 CHROMAT_FILE:
MSMg01no448_d18.b1 PHD_FILE: MSMg01no448_d18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:26 2005
         (550 letters)



>mm_chr15_79829453_79830402
          Length = 950

 Score = 1029 bits (532), Expect = 0.0
 Identities = 541/546 (99%), Gaps = 5/546 (0%)
 Strand = Plus / Plus

                                                                       
Query: 8   gaattccaaaactta---gcactggcctaggctctactagagatgaacctggaggccagt 64
           ||||||||||||  |   ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattccaaaac--accagcactggcctaggctctactagagatgaacctggaggccagt 264

                                                                       
Query: 65  cccgcaatattcttaactttccggttctaacacttaaagagttcttcctgcgtgggggct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cccgcaatattcttaactttccggttctaacacttaaagagttcttcctgcgtgggggct 324

                                                                       
Query: 125 ggagaggtggctcagaaggtgaagagcattggctgctcttccagaggacccaagttcaat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggagaggtggctcagaaggtgaagagcattggctgctcttccagaggacccaagttcaat 384

                                                                       
Query: 185 tcccagcacccacagggcagctcccagttgtctacaactccaagagctgacaccctcaca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcccagcacccacagggcagctcccagttgtctacaactccaagagctgacaccctcaca 444

                                                                       
Query: 245 cagacatacatgcaggcaaaacaccaatgcacagaaaataaaaataaataagttagccag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cagacatacatgcaggcaaaacaccaatgcacagaaaataaaaataaataagttagccag 504

                                                                       
Query: 305 actgccaggctgaggttggactatgtgaccggaaatctgagcatctttagacttcgggta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 actgccaggctgaggttggactatgtgaccggaaatctgagcatctttagacttcgggta 564

                                                                       
Query: 365 cttccgctacacagagaaaggagcctctgagatgtttccaactcaaaccgaactgcctga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cttccgctacacagagaaaggagcctctgagatgtttccaactcaaaccgaactgcctga 624

                                                                       
Query: 425 cccttgcagaatcagacatgcactcctctggtggatgcgtgaacgtcagacccactctcc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cccttgcagaatcagacatgcactcctctggtggatgcgtgaacgtcagacccactctcc 684

                                                                       
Query: 485 acatcccagctgtatggatgctcagcctttacttgtgtatctccaggagatgttgtgagt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 acatcccagctgtatggatgctcagcctttacttgtgtatctccaggagatgttgtgagt 744

                 
Query: 545 gaaggg 550
           ||||||
Sbjct: 745 gaaggg 750


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space:   507600
Effective search space used:   507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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