BAC Information

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BAC

Clone NameMSMg01-448I09
Chromosome15 (Build37)
Map Location 69,775,032 - 69,901,157
singlet/doubletdoublet
Overlap geneLOC383050
Upstream geneKhdrbs3
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-448I09.T7 (MSMg01no448_i09.b1)MSMg01-448I09.TJ (MSMg01no448_i09.g1)
ACCAG536717AG536718
length722775
length of high quality
(start - end)
248 (72 - 319)373 (79 - 451)
definitionCHROMAT_FILE: MSMg01no448_i09.b1 PHD_FILE: MSMg01no448_i09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:49 2005CHROMAT_FILE: MSMg01no448_i09.g1 PHD_FILE: MSMg01no448_i09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,775,032 - 69,775,276)(69,900,785 - 69,901,157)
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCGCGCGG
AATTCACTTTGTTACCAAGCTGGCCTCGAACTCAGAAATCCTCCTGCCTC
TGCCTCCCGAGTGCTGAGCTTTAAGGTGTAAAAAGTTTAAAATATTAGAA
AAAACATTGATAAATTAAATTTTTAACATGGCTAGCTAAATTATATATTA
TAACAAAAGTTCATAAGTGGTATATAATGAATTTAATTAAAAATTCTATA
CTTGTACTGTTCAGTTTGATAGACACATGCCACTGAGTGCGTGACCACTA
AATATCTGAATACTTGTTTTTATTCTAAAATAAAATGTATTATGAATCAC
AAACTTACTTATATTTGCAGTATTTGCTAAGATGAGAAGCACATTATTTT
ACTTATTATCAGTCTCAGATGCGTTACTCATCTTACTAATGATAGTCAAC
CGAACCACGTTTAAAATACACCTTTGTGAAATTTATAACTCCTCCTATTC
CCAATAACCATCGTATCCGTTTACTCATCATCTGCCTTAAGCACTTTCAC
AGTTGCTTGTTTATCAACACCCATTCCTTCATTACATTTATTCACTGAAC
TGCCTGATCTAACCATCCACCCTCACCAGCTGTATCCTTGATTTCCCGAT
TTCCGTCACTGCCCTCTTTGTTTCAACCAGATGTTCTATAATGCCTTTCA
CACAATTTCCACCCATTTCTGG
TTCACGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTGATGAGGGAAATACAGTCAGT
GGGATTTCCATTCCTGGTTTTTGCAGACTAGTTGTGAATAGTGGTGAATG
TGAGCAGCATTTGGAAATTCCAATGCAGATGATTTTGTGTATTTTTTGAG
AGCCTTCAGAGGGCACAATATTTTTCTCATCTTTCAGTTTTCATAATTAG
GAACTATCAGTATATTGGCATTTCTACCATCCAAAATTCCTAAATTATAC
AATTAAAAATCTCTGCTGATTTTCTTTTGATGACTTGCACTAGTGAAAAT
CAACCTGTTGTTATAAATGGTTGTTAGTATGCTGTGATATAGCTTAATTG
AGCTTAGTATAATCTGGCCCTACACATGTTCTTGGGATGGGACTAATAAA
GACTAAATTATTATGTAGCGCCCAAGGTTATGTGCCATTGTACATATTAT
AAGGAAGTCCCCTATGACTCCTAAAGTTCTTAAAAGACAGCGAAATATTC
TACCCCTTCTTGGATATTTACCAAGATTCCGGGCTTCCTTAACCACATAT
TTCTTCACCCCCCCTTTTTGATAAATTTTATTATGATTTCTGTTTCCCCT
TGTCCTTTTCTTTTTTTTCTTTTCTCTCCTCTATCTCTTCTCTCGTATTC
AATCCCTTTCTCCTGCCCATTTTCTTTTCTTTCTCCCCTTTTGTTTATTC
CCCCTCCCCTCCCACTTTTTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no448_i09.b1 MSMg01no448_i09.b1 CHROMAT_FILE:
MSMg01no448_i09.b1 PHD_FILE: MSMg01no448_i09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:49 2005
         (248 letters)



>mm_chr15_69774832_69775479
          Length = 648

 Score =  435 bits (225), Expect = e-126
 Identities = 240/245 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggcctcgaactcagaaatcctcctgcctctgcctcccgagtgctgagctttaaggtgtaa 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 ggcctcgaactcagaaatcctcctgcctctgcctcccgagtgctgagctttaaggtataa 260

                                                                       
Query: 61  aaagtttaaaatattagaaaaaacattgataaattaaatttttaacatggctagctaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaagtttaaaatattagaaaaaacattgataaattaaatttttaacatggctagctaaat 320

                                                                       
Query: 121 tatatattataacaaaagttcataagtggtatataatgaatttaattaaaaattctatac 180
           |||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||
Sbjct: 321 tatatattataacaaaagttcataagtggtatataatgaatttagtttaaaatcctatac 380

                                                                       
Query: 181 ttgtactgttcagtttgatagacacatgccactgagtgcgtgaccactaaatatctgaat 240
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 ttgtactgttcagtttgatagacacatgccactgagtgtgtgaccactaaatatctgaat 440

                
Query: 241 acttg 245
           |||||
Sbjct: 441 acttg 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no448_i09.g1 MSMg01no448_i09.g1 CHROMAT_FILE:
MSMg01no448_i09.g1 PHD_FILE: MSMg01no448_i09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:49 2005
         (373 letters)



>mm_chr15_69900585_69901357
          Length = 773

 Score =  652 bits (337), Expect = 0.0
 Identities = 364/373 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgatgagggaaatacagtcagtgggatttccattcctggtttttgcagactagttgtgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 tgatgagggaaatacagtcagtgggatttccattcctggtttttgcagactagttgtgaa 514

                                                                       
Query: 61  tagtggtgaatgtgagcagcatttggaaattccaatgcagatgattttgtgtattttttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 tagtggtgaatgtgagcagcatttggaaattccaatgcagatgattttgtgtattttttg 454

                                                                       
Query: 121 agagccttcagagggcacaatatttttctcatctttcagttttcataattaggaactatc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 453 agagccttcagagggcacaatatttttctcatctttcagttttcataattaggaacaatc 394

                                                                       
Query: 181 agtatattggcatttctaccatccaaaattcctaaattatacaattaaaaatctctgctg 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 393 agtatattggcatttctaccatccaaaattcctaaattatacaattaaaaatctttgctg 334

                                                                       
Query: 241 attttcttttgatgacttgcactagtgaaaatcaacctgttgttataaatggttgttagt 300
           |  | | |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 333 acctgcatttgatgacttgcactagtgaaaatcaacctgttgttagaaatggttgttagt 274

                                                                       
Query: 301 atgctgtgatatagcttaattgagcttagtataatctggccctacacatgttcttgggat 360
           |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||
Sbjct: 273 atgctgtgatatagcttaattgagcttagtataatctgggtctacacatgttcttgggat 214

                        
Query: 361 gggactaataaag 373
           |||||||||||||
Sbjct: 213 gggactaataaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 773
Length adjustment: 9
Effective length of query: 364
Effective length of database: 764
Effective search space:   278096
Effective search space used:   278096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)