Query= MSMg01no450_a16.b1 MSMg01no450_a16.b1 CHROMAT_FILE:
MSMg01no450_a16.b1 PHD_FILE: MSMg01no450_a16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:49 2005
(330 letters)
>mm_chr15_92232165_92232894
Length = 730
Score = 497 bits (257), Expect = e-145
Identities = 307/331 (92%), Gaps = 17/331 (5%)
Strand = Plus / Plus
Query: 1 gcctgaaggaatttatgtctcaaaaattttagaaaacggacctgcagaccgagcagatgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 gcctgaaggaatttatgtctcaaaaattttagaaaacggacctgcagaccgagcagatgg 275
Query: 61 cctggaggttcatgacaaaatcattgcggtaaggcggtaaaaaaataaataaataaaaaa 120
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 276 cctggaggttcatgacaaaatcattgcggtaaggcggtaaaaaaaaaaa-aaataaaaaa 334
Query: 121 taaaaaacaggtgcatgatccgcgatgaaggctctgtaaggtcgctcacacattgttcac 180
||||||||||||||||||||||||||| | || ||||||||||||||||
Sbjct: 335 taaaaaacaggtgcatgatccgcgatg-----t-tg--------ctcacacattgttcac 380
Query: 181 ctcctc-gtccttatcagagtgtaaatctcatggcagtggagaaactgatgttttatgtc 239
||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctc-tgagtccttatcagagtataaatctcatggcagtggagaaactgatgttttatgtc 439
Query: 240 ttcctaattttgtaaaactcgatgatgattcagtatcaatcagcagatagggggatgaaa 299
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ttcctaaaaatgtaaaactcgatgatgattcagtatcaatcagcagatagggggatgaaa 499
Query: 300 gtaggaactgcctcaagttttcagctgtgtt 330
||||||||||||||||||||||||| |||||
Sbjct: 500 gtaggaactgcctcaagttttcagccgtgtt 530
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 730
Length adjustment: 9
Effective length of query: 321
Effective length of database: 721
Effective search space: 231441
Effective search space used: 231441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no450_a16.g1 MSMg01no450_a16.g1 CHROMAT_FILE:
MSMg01no450_a16.g1 PHD_FILE: MSMg01no450_a16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:49 2005
(604 letters)
>mm_chr15_92442065_92443068
Length = 1004
Score = 1083 bits (560), Expect = 0.0
Identities = 593/604 (98%)
Strand = Plus / Minus
Query: 1 actccaatctattttgtgttctttgttcaagtttatttctgcttgaactttgtaaacagc 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 804 actccaatctattttgtgttctttgttcaagtttatttctgcttgaaccttgtaaacagc 745
Query: 61 accacacatgcacatgcgtgcctgcacaggtgcacacacatactataaagtatgtgacac 120
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 744 accacgcatgcacatgcgtgcctgcacaggtgcacacacatactttaaagtatgtgacac 685
Query: 121 tatcacatcaccaaagacaaaagtcctcattgttcctttaagaaaaagcacaaggacctc 180
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 684 tatcacatcaccaaagacaaaagtcctcattgttcctttaaggaaaagcacaaggacctc 625
Query: 181 atggggaagagaggcgcagaggccaaagctcatggctgctgctgctgctattgtgcagga 240
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 624 atggggaagagaggagcagaggccaaagctcatagctgctgctgctgctattgtgcagga 565
Query: 241 ttcagtgtcccataaaataacatgattaaacaaatgcttggagcatttcagaaatagctt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttcagtgtcccataaaataacatgattaaacaaatgcttggagcatttcagaaatagctt 505
Query: 301 gctgttccgcaatttgctgaacacaaatacaatattcaacagacccaagaagaaccttgg 360
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gctgttccgcaatttgttgaacacaaatacaatattcaacagacccaagaagaaccttgg 445
Query: 361 aagacgaagccttccaaaatcactatagttttggcttcggcttacaataatggtcatttc 420
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aagacgaggccttccaaaatcactatagttttggcttcggcttacaataatggtcatttc 385
Query: 421 aattatcagctatcacaggacaaaaagtgagcacttatgatagctctccgaagggggagg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aattatcagctatcacaggacaaaaagtgagcacttatgatagctctccgaagggggagg 325
Query: 481 ggacctaagatgaaggcgcctgaccttgctgattctattcctgagactttgccaaaatat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ggacctaagatgaaggcgcctgaccttgctgattctattcctgagactttgccaaaatat 265
Query: 541 cctgactaccaacagtggtagagctattaaattcatcttgcacagatcaaacattccagg 600
||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct: 264 cctgactacaaacagtggtaaagctattaaattcatcttgcaaagatcaaacattccagg 205
Query: 601 gcgc 604
||||
Sbjct: 204 gcgc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space: 590436
Effective search space used: 590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
