BAC Information

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BAC

Clone NameMSMg01-450D22
Chromosome15 (Build37)
Map Location 98,766,526 - 98,766,921
singlet/doubletsinglet
Overlap genenone
Upstream geneTmem106c, Col2a1, Senp1, Pfkm, Asb8, AI836003, Olfr288, LOC634104, EG629524, H1fnt, Zfp641, Olfr285, Olfr284, Olfr283, 1700031M16Rik, LOC100042818, Olfr282, LOC629549, Olfr281, Olfr240-ps1, GA_x5J8B7W76D0-7895713-7896429, Lalba, Olfr234, Olfr278-ps1, 2310037I24Rik, LOC100043418, Ccnt1, 4930415O20Rik, Adcy6, Cacnb3, Ddx23, Rnd1, Ccdc65, Fkbp11, Arf3, 5830427D03Rik, Wnt10b, Wnt1, Ddn, Prkag1, Mll2, Rhebl1, Dhh, Lmbr1l, Tuba1b
Downstream geneTuba1a, EG668092, Tuba1c, Prph1, Troap, C1ql4, 2810451A06Rik, Spats2, Kcnh3, Mcrs1, EG545136, Prpf40b, Fmnl3, Tegt, C230021P08Rik, 4930556P03Rik, Faim2, LOC545137, Aqp2, Aqp5, Aqp6, Racgap1, LOC100043473, Accn2, Smarcd1, Gpd1, 2310016M24Rik, Lass5, Lima1, LOC100043481, LOC100042918, 1700030F18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450D22.T7 (MSMg01no450_d22.b1)MSMg01-450D22.TJ (MSMg01no450_d22.g1)
ACCAG538021AG538022
length781756
length of high quality
(start - end)
454 (73 - 526)249 (76 - 324)
definitionCHROMAT_FILE: MSMg01no450_d22.b1 PHD_FILE: MSMg01no450_d22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:06 2005CHROMAT_FILE: MSMg01no450_d22.g1 PHD_FILE: MSMg01no450_d22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAAATCCGCGGAAT
TCAATTCTTGTATCGAATAAACTGAGAACTGACTCTCAACAGTTGTTCTC
TGTCTCCCAGTGTGTACTGTACCATGTGTGCACAACCTGCCCCCCTCCCC
ACTTATTAAATTTTAAATAAAAAGTTGCCAGACATGGTGGCAGATGCCTT
GAATTTCAGTGCTCAAGAATCAGTGGCAGGCAGATCTCTGCATGTTTGAG
GCCATCCTGGTCTACATAGTGAATTCATACAACAACATAGTGAGACTCTG
TTTCAAACAAAATCAAACAATGTTTTTAATGAAAAAAAGAAAGAACGAAA
GAGAATTAATTCAATGTCATTCTTGGCTAAGTAAGTTCCAGAGCAAATTG
GAATATTTGAGACAAAAGAAAGATCACCTGTCTCAAAAAACCAAAAATAA
AGAAAGATCAGAAACCACCACGCCGAAAATTCTCTCAGCCGGGCAGGCTG
GTGGGTCTCTGTAATCCTAGCATTTGGTAGAGACAGGAGGATCAGAAAGA
GTTCATAGCCAAGGAACTCTGCGCATATGTGAGGTAGCCTGCCTTATAGG
AAACACTGTCTCAAAACAAAACCATATACCTTTTGACAAGTAAATCGGAT
CACGTTTTCCTCTTCCCCCGCGTTAATGCAAAACTACCACTTCTTACTAA
TTTTGGTGTGCGTGCGCGTCCGTCATTCCCACATGCCCGCATTACCTGGG
TTTTAACTTGCCCGTTTTACTCCTCACTCTA
NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCCAGAAATTCTTGACACCAATATGGCAGCTTA
CAACTGTGTTACCAGATCCCAGGCTTGGTAGTAAGCGCTTTTACCTGATA
AGCCACCTCGACCCTTTTTGAGAGAAGTGTGTATGCATTCTAGACTGTCC
TGAATTTGTTATGCAGACCACAGTGGCCTGGTTCTGCCTCCCATGTGCTG
TGATTACAGGCACACACCATCCCTGTGTCTTGGCAGGCTCTCAGTCCTCA
GGAACACTGAGTCTGAGAACATGAATTTCTCTTTCCTAGTTGTCAAATTC
AGGAGAGGGACTGGGGGCCACAGGTGGCTTCCTTTCTGCCTGACAGACAT
GACAAATGCCCTGTCTTCCTCAGTGGAGCCATTTGCAGAGTGTCAGTCCT
TGTGCCTGTGCAGGAACGGGAAGCACGTGGCAGCCTTTGCAGATGAAGGG
CAGAGTCAGTGCTGGGATCCCAGCCCTGCCCTCTATTACAGCATACACAG
GAAGTGATCCTAGGACAGCGGCTAGACACCTGAGCTGATGGGTGGCTCTG
CAAGCCCAGTCACCGAAGTTCTGCCTAAGCACCCATGGCCTTTGTGATCC
GCGACTCCAGCTGGTTTATATTGTTTCCCAAGCATTTTGGGAAACTTTCC
TCCTGGAGATGGAGGCAAACCATTTGAAGGACTAAACTTTACTGTTTCTT
TAGCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_d22.b1 MSMg01no450_d22.b1 CHROMAT_FILE:
MSMg01no450_d22.b1 PHD_FILE: MSMg01no450_d22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:06 2005
         (454 letters)



>mm_chr15_98766068_98766921
          Length = 854

 Score =  683 bits (353), Expect = 0.0
 Identities = 385/401 (96%), Gaps = 10/401 (2%)
 Strand = Plus / Minus

                                                                       
Query: 59  cacaacctgcccccctccccacttattaaattttaaataaaaagttgccagacatggtgg 118
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854 cacaacccgcccccctccccacttattaaattttaaataaaaagttgccagacatggtgg 795

                                                                       
Query: 119 cagatgccttgaatttcagtgctcaagaatcagtggcaggcagatctctgcatgtttgag 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 cagatgccttgaatttcagtgctcaagaatcagtggcaggcagatctctgcatgtttgag 735

                                                                       
Query: 179 gccatcctggtctacatagtgaattcatacaacaacatagtgagactctgtttcaaacaa 238
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 gccagcctggtctacatagtgaattcatacaacaacatagtgagactctgtttcaaacaa 675

                                                                       
Query: 239 aatcaaac-----aatgtttttaatgaaaaaaagaaagaacgaaagagaattaattcaat 293
           ||||||||     || |     || |||||||||||||||||| ||||||||||||||||
Sbjct: 674 aatcaaacaaggaaaag-----aaagaaaaaaagaaagaacgagagagaattaattcaat 620

                                                                       
Query: 294 gtcattcttggctaagtaagttccagagcaaattggaatatttgagacaaaagaaagatc 353
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gtcattcttggctaagtaagttccagagcaaattggaatatttgagacaaaagaaagatc 560

                                                                       
Query: 354 acctgtctcaaaaaaccaaaaataaagaaagatcagaaaccaccacgccgaaaattctct 413
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 acctgtctcaaaaaaccaaaaataaagaaagatcagaaaccaccacgccgaaaattctct 500

                                                    
Query: 414 cagccgggcaggctggtgggtctctgtaatcctagcatttg 454
           ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 499 cagccgggcagactggtgggtctctgtaatcctagcatttg 459


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space:   374736
Effective search space used:   374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)