BAC Information

Click to search

BAC

Clone NameMSMg01-454I06
Chromosome15 (Build37)
Map Location 50,003,300 - 50,003,475
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039539, LOC665160
Downstream geneTrps1, LOC100039644
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-454I06.T7 (MSMg01no454_i06.b1)MSMg01-454I06.TJ (MSMg01no454_i06.g1)
ACCAG541274AG541275
length1,002781
length of high quality
(start - end)
---178 (77 - 254)
definitionCHROMAT_FILE: MSMg01no454_i06.b1 PHD_FILE: MSMg01no454_i06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:25:44 2005CHROMAT_FILE: MSMg01no454_i06.g1 PHD_FILE: MSMg01no454_i06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:25:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AACAATAACAAGACGCCCTCCTTCCCGGCGCTGGTCGTCTCCTTTAGAGG
TGGATAATAAACAATATATTATCCAGTCACAGTGACGCTATTATTTTGCA
AGACGAGGACGCAAGCCAGGAGGGGATATCTTATGTGATATCGCGGCGGG
ACGCGCGTCGCGATGGTGCAGAGACTGACACCGTAGGAAGCCGGCTGCGC
GCCGCGCCAGGGATACGTAGTTTACAAATGGAGTGGGTCGACGAAAGGAG
TAGTGGAAAACGTGGACATTCCTGACCGTAGCGCACCCGAAGCCATCGTA
TCTCCTGTTTCCAATCAATAATCGAATATCATTAGATACAAACGTTCATA
ACGGATCGAACGGTTAAAGATAGTATTATTCGTTTTCTAATGCCGTTTCT
CTCTCTCAGTATCCGCCCGCCGCACCGATATTGTGAGTACTCTGCAGCGC
TTGGATGCTGCTCACACCGGCCTTGCTCACTCCTCCTTATTTCTACCGGC
CAACACTCACCCATAATACACTACGGACCCCTCGTCACGCGGTTACATTA
ACAACTCCCATTATCGCTACTCTCGACAGTGGAGCCAACTGGCATAAACC
TAACCGTATCCCCGCATCTGCTGCCTTATCTACTCCCTCGCGACAACCAC
TCACGCGCCGCTACCGTTTTATACTCAATACAACATAACCACGCCGCTTC
GGCTTTAGTTGTATCCGCCAGTTTTATTTAAATACCTCTGATCCATCCTC
ACCATGTCATCCCTTGCACGCGCCCTACATCCCCTTATACACACCCTCAC
ACATCTCTTTTGATCCGACAAACCCTGGTCCTACGCGCGCCCCTCAATAT
TCAATAACCATCCCGATCGATTTTTTTCCGACCCCGTCTTATTTATGCGC
TGCTCATCCCCCCTATATTATTGATACCACCTCGCAACCCGCCCCGCCCT
ATTTTCATGTTTCTTCCAGCACTCGACCGGTCACGTCCAATATTGACCAT
GN
CCCGATGATAGTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATCGAAATTTTTCTTGACTTTTGA
AAATTTATTGGATCTGAAGCTAAAATCATGCTGAATGTTACCCAGGAAGA
ATATGCAGAATAAAACTGTGTTTATAGTTCCACACAGGATGAAAAATTGT
GAAGGAAAATGGTTCATAAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTNTNTNNNNNNNNNNNNNNNNNTTNNTTTTTTTTTNTTTTTTTNTTT
TTNNNNNNNNNNTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNTTTTTTTTNTNTTTTTTTTTNNNTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTNTTTTTTTNNTTTTTTNNNTTTNNNTTTTTTTTT
TTTTTTTTTTNNTTTTTTTTTTTTTTTGTTTTTNTNTTTTTTTTTTTNTT
TTTTTTTTTTTTNTTNTTTTTTTTTTTTTTTTTTTTTNNNNTNTNTTTNN
TTTTTTTTTTTTTTTTTTTTTTNNNNTNTNNNNTTTTTTTTTTTTGTTTT
TTTCCTTTTTTTTTTNTTTTTTTTTTTTTTCNTTTTCNCTTTTNNTTTTT
TTTTTTTTTTTTTTTTTTTCNNTTTTNTTTTTCCTTTTTTTTTTTTTTTT
CTCCCTTTCCCTTCTTTTCTTTTTTTCCCCTTTTTTTTTTTTTTCTTTCT
CCTCCCCCCTTTTTTCTTTTTTCGCTCTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no454_i06.g1 MSMg01no454_i06.g1 CHROMAT_FILE:
MSMg01no454_i06.g1 PHD_FILE: MSMg01no454_i06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:25:44 2005
         (178 letters)



>mm_chr15_50003100_50003677
          Length = 578

 Score =  311 bits (161), Expect = 1e-89
 Identities = 173/177 (97%), Gaps = 2/177 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcgaaatttttcttgacttttgaaaatttattggatctgaagctaaaatcatgctgaat 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 atcgaaatttttcttgacttttgaaaatttactggatctgaagctaaaatcatgctgaat 260

                                                                       
Query: 61  gttacccaggaagaatatgcagaataaaactgtgtttatagttccacacaggatgaa-aa 119
           |||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||
Sbjct: 261 gttacccaggaagaatatgcagaataaagctgtgtttatagttccacacaggat-aagaa 319

                                                                    
Query: 120 attgtgaaggaaaatggttcataaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 176
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 attgtgaaggaaaatggttcataaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 376


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 178
Length of database: 578
Length adjustment: 8
Effective length of query: 170
Effective length of database: 570
Effective search space:    96900
Effective search space used:    96900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)