BAC Information

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BAC

Clone NameMSMg01-456I14
Chromosome15 (Build37)
Map Location 86,854,793 - 86,855,037
singlet/doubletsinglet
Overlap genenone
Upstream geneCelsr1, BC021523, Cerk, LOC100042300, Tbc1d22a, LOC100042309
Downstream geneAW049604, LOC100042329
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456I14.T7 (MSMg01no456_i14.b1)MSMg01-456I14.TJ (MSMg01no456_i14.g1)
ACCAG542816AG542817
length1,195761
length of high quality
(start - end)
---245 (76 - 320)
definitionCHROMAT_FILE: MSMg01no456_i14.b1 PHD_FILE: MSMg01no456_i14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:23 2005CHROMAT_FILE: MSMg01no456_i14.g1 PHD_FILE: MSMg01no456_i14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGGGCCGTGGCCGAGAGGTAGGATCGACTGTGTCCTCTCTCTTCCCTCCA
ACCGCGCCGCCGACGCGTAGGGGCGGACGTTCTCTCCTGTCGAATATAAC
GCGTTTCGTCACTCCTACCCCCCGTCGCTTCCCGACTATCGCTCTTACTG
CCGACTCACCCCCACAGAACTCACGCGCGCCCCGTCGTGCCTGCACCGTA
TTATATTTTCTCCTCTATCGATATTACCCCCACGATAAATCGTCGCATCC
TCCCCCCAAGCGGCCTGTACCCCTGCGTGGATTTTCTCATTATATATACC
CCTATTCTCTTACTCACCAGTCTGTCCCTCTCTATCTCGTGCTCCGTTTC
CCGCATATAGCCGCATCCGCCCTCGCCGCACATACCCTCTCGCCACCCCC
GCACCGTGTGTATTAATAGATATAACAGCACGCGCAATCGGTGATAGAGA
CAAAACGCTCACCCCACTATGCGCCTCCTGCCGTCACATTGAATGCGCCA
CTACACCCCGCGCATGAGCGACATCCATTACAAAGTCATATATCCGCCGC
GTTGTTCACCGCTATTTCAGCTGTTGCGTCTAGCGCGCAAGAGTCGCAGC
TAGTACCGCAATGCGGCTGTCCGTGTCCGTTTCATTGCTATGTACCAATA
AATGCACACGCCGTTCTACGGGGGAGCAAAACATAATCACACGTCCCAAG
TGTCTGTATGACGACCGCCCCAAGGAGGGCACCCTGTGATTTTGAAGCCG
ATATGCGGAGGAGACTCTAGCAACTCACCACCCGCAGTCTTTATTCGACA
ACAGATATGTAACACACCANTCACTAAGTGTTGTTCGCTATATACCGCAC
CACCGCAAGGAAGCATTTGGACGTTGTGCGTTATACCGCTGGGGCGTCAC
GACCTGCCTCAACGGCGGGATTGATGTTGGTGATGGTAGGGCTCACATAC
CTCTATATATGTCTCTCCTCCACCGCCCGCCACCCTTATAAGTGACACCT
CTTGAGTTACATGTAGAGTGTANTTGATTTCACCTACGATCACACCTCTC
TACATCTATTTACATNTGGTTAGCCAACCGCGTGGTAACGCGTAGAAGAC
GTGATATCATGATGGTAGTAACGCACTCCGCCCTCTTGTCTACGCCCCTT
TGGCAAACTACTTTATATACCTCTGCCAGCCCGATTCGACTCCTG
NCCGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTACTCCCTAAAAGATATCCAAGGTC
CTCATTTCAGTGGCTGGCCCATTTGTCCTCCACACAAGGCCCCCAGAAGC
CTCAGGTTCTTTCAGTTCAGATGAGTGTGACCTTCCACAAGACTAGATCT
GAGGTTCTTGCAGTAGCCCCATCTCCTCTCTGTGCAAATCTGTGGTCCGT
GAGTCTTTGTGAGCCCTTTACACTAAAAAAATTCTGAACAAACAAAACTA
AGTCAGAGCACTGGGGCCTCCTCTTTTTGCTCCTTTCTGGCTAGAAGATG
GCTACCTCTCTCCCACTGGGTCTAAACTTTAATTATCTTTAAAGAAAGTT
GCCCACATTTTGTGGGTAAGGGAGTCTACAGAAAACTAAAGTGACCAGAA
GGCTACTACAGATTGAGGTTTTCTTTCTCATCTCAGGATCTAGGGAACCT
TCCAGAACCTGCCATGTGTAGAACCTTCAGAGGAGGCTCTTGAGTCTGCC
CATTACTTCTTGAGCTTGATACCCCTATCCCCAGCGTGTTGGAGTAAAGA
AAAACTATTCCTGAACTGTTAATTTGCTTCTTGGTACTTTCCTTGGGAAT
CTTATTTTTTTTTTTCTTTACCACCATATGTGTGGCTCATCTTTTTTTCA
TTTTCCTTTTCTTCCCACTCTATTCATTCACTTTTTTTTTGGTTCTCTTT
TTCTTTATCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_i14.g1 MSMg01no456_i14.g1 CHROMAT_FILE:
MSMg01no456_i14.g1 PHD_FILE: MSMg01no456_i14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:23 2005
         (245 letters)



>mm_chr15_86854593_86855237
          Length = 645

 Score =  466 bits (241), Expect = e-136
 Identities = 244/245 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tactccctaaaagatatccaaggtcctcatttcagtggctggcccatttgtcctccacac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tactccctaaaagatatccaaggtcctcatttcagtggctggcccatttgtcctccacac 260

                                                                       
Query: 61  aaggcccccagaagcctcaggttctttcagttcagatgagtgtgaccttccacaagacta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaggcccccagaagcctcaggttctttcagttcagatgagtgtgaccttccacaagacta 320

                                                                       
Query: 121 gatctgaggttcttgcagtagccccatctcctctctgtgcaaatctgtggtccgtgagtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatctgaggttcttgcagtagccccatctcctctctgtgcaaatctgtggtccgtgagtc 380

                                                                       
Query: 181 tttgtgagccctttacactaaaaaaattctgaacaaacaaaactaagtcagagcactggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 tttgtgagccctttacactaaaaaaattctgaacaaacaaaactaagccagagcactggg 440

                
Query: 241 gcctc 245
           |||||
Sbjct: 441 gcctc 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)