BAC Information

Click to search

BAC

Clone NameMSMg01-456L02
Chromosome15 (Build37)
Map Location 25,726,943 - 25,727,357
singlet/doubletsinglet
Overlap geneMyo10
Upstream geneLOC100040529, 9230109A22Rik, 4930445E18Rik, Basp1, EG432939, LOC100040583, LOC100040602
Downstream genePpia-ps15_175.1, 1810015C04Rik, Zfp622, AK162044, Fbxl7, LOC622531
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456L02.T7 (MSMg01no456_l02.b1)MSMg01-456L02.TJ (MSMg01no456_l02.g1)
ACCAG542935AG542936
length7491,309
length of high quality
(start - end)
415 (67 - 481)---
definitionCHROMAT_FILE: MSMg01no456_l02.b1 PHD_FILE: MSMg01no456_l02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:36 2005CHROMAT_FILE: MSMg01no456_l02.g1 PHD_FILE: MSMg01no456_l02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGATAGCCAGATGTGGTGGTTCACACACTGGGTCCTAGAACTTGA
GAGGCGGAGACAGGAGAAGACTGTCCTAACTTTGACACCAGTCTGGACGA
ACATAGTCTCAAAAAATAAAACACAAGAAGAAAAGCTATCCCAAGCAGAT
CGTCCACACAGACACCACCCCCTTCTGCTTTGCAGCGTTTGCAAATGGAT
GGTTAAAGTCTGGCTTCTCATTTACCTTAGCAAGCCAAAGTCAGCCTGCT
AGAGGACTTTAGATGAGTGGTTGCCAGGGCTTCATACATAGCCTAGAGAA
GGGGGCAGTGGCAAGGCCAGAGGCCACCATGTTCTCTCTTTGAAGTGCCA
TAATTGGAGCTTACCTATCAGGGCTGTCAGAGGCGCATACAGAATCAATC
AGCCCGACATCCAGTGTGCCCTGCAAAGGGACAGATAGGACAGAAAGGGT
GACAAAGGAGCCAGAAGAGCATGACCTCATACAGCATCACCAGACTGTAT
CACACCAAGGAAATGCGTTCTCTCTCTCTCTCTCTCTCTCTCTATCTCGC
TCTCTCTGAGTGGGTGTGTGTATGCATGCATCTGTGTTTCCATTGTTCGG
CTTAATATTAATCCCCCCCCCCTTTGATACCATTTCGTGCAGTCCCCTTC
TGTACCTTCCGTAGCACTCATCTAATCAATTCCCGCACGATGTGTAAAG
TCCCGCTCTTCAGTACCGCTACACTGACTCGACNTCGCCCCTCTGCTGTG
CCTCTCCCTCTTCCTCCCCCTCACGTCGCAGCCTATATTTTCCTTCCATT
CTTCTGTTCTCCTCACATCTCCTTCATCAGTACTATATTTCTATAACNCC
ATGCACACACACATCTACTCTATTCATCATNCAACCTGATACCTACTCCC
GACTCTGGACATGCACCACTCGCCACTTTTCGTATTGTACCCTCCTGTCT
TCGTGCTGCTTTTNTTTCTAATTATATACTAAGCGACACCTATACTATCA
CAGTCACAATTACTCTATCTGCTCCCTCTATACCACTATATCCACCAATC
TATTCATACNCATATTAAATCTCATATATCATGACACATATCCACGAAGT
AATCACAGCCCGACAACATCCATCGACATCTAATAACACTCTGCACAATT
CTGTACACTTTGTTACTTAAGACTCTGATCCGCTGTATATTCTAGCTGAT
ACCACATACCTACGCCATCAACCACTCACCGACGTCACTCACTCCTCATA
TAACCACCTAATATAACTCCGAATAAGAATCATCTGCTATCTATCTGTAC
TATCTATTATCAGACCTATTATACTATCCACATACTTATCTACATCTACA
CACTAATTATGATGACCTCATAATTTACATCATACCTTAACTATCTCACA
TTTATCTCATATCTGTACTAACTATTACATGTCAGCCTTCATCGCCACCG
CAATTCTTATCATACCACATACTATACTCACCGCACTTATACTTCTACTA
CATCCNCATTCGTTTCTACACACCTCGCTCCCATCCTACGCCTCAATTTT
ATTCACACACTTTACTCCTCCATACTTCGCTCTTATCCGCTCGTAATCAG
CATTTTACTATTTCTCTCCACACAGCGCCACGCTCGTCTTCATTTCTCTC
ACCGCTTACCTATCTAATATATCACACCTCGAACTCTATTTCGACTATTA
CTCTCACACTGCATTACGATTTCCACCATTATTATTATACATTACGCCAC
TTACTACTGTATGCCTCGCTCTCTACACATACTACACACTAACTCTCTAT
ATATCTTGACACATCTCATCCACCATACGCGTATGCTATATGCTCCTCGC
ATACTATGTATTATTCCGTACTCCCACNCCTTCTCATCACAGTCTGCGCC
ACCACTATCCTCATATCGCTCGCGCCACCATGCTCTTATTTCAGCGACGC
GACATCATATTCTACTGTCGCACACTCAATACCACTGTCGTCGCNCAACT
CTTATATCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_l02.b1 MSMg01no456_l02.b1 CHROMAT_FILE:
MSMg01no456_l02.b1 PHD_FILE: MSMg01no456_l02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:36 2005
         (415 letters)



>mm_chr15_25726638_25727452
          Length = 815

 Score =  758 bits (392), Expect = 0.0
 Identities = 410/416 (98%), Gaps = 2/416 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtggtggttcacacactgggtcctagaacttgagaggcggagacaggagaagactgtcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 tgtggtggttcacacactgggtcctagaacttgagaggcggagacaggagaagactgtcc 661

                                                                       
Query: 61  taactttgacaccagtctggacgaacatagtctcaaaaaataaaacacaagaagaaaagc 120
            ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 660 aaactttgacaccagtctggacgaacgtagtctcaaaaaataaaacacaagaagaaaagc 601

                                                                       
Query: 121 tatcccaagcagatcgtccacacagacaccacccccttctgctttgcagcgtttgcaaat 180
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 600 tatcccaagcagatcgtccacacagaaaccacccccttctgctttgcagcgtttgcaaat 541

                                                                       
Query: 181 ggatggttaaagtctggcttctcatttaccttagcaagccaaagtcagcctgctagagga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 ggatggttaaagtctggcttctcatttaccttagcaagccaaagtcagcctgctagagga 481

                                                                       
Query: 241 ctttagatgag-tggttgccagggcttcatacatagcctagagaagggggcagtggcaag 299
           | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 cgttagatgaggtggttgccagggcttcatacatagcctagagaagggggcagtggcaag 421

                                                                       
Query: 300 gccagaggccaccatgttctctctttgaagtgccataattggagcttacctatcagggct 359
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 420 gccagaggccaccatgttctctctttgaagtgccata-ttggagcttacctatcagggct 362

                                                                   
Query: 360 gtcagaggcgcatacagaatcaatcagcccgacatccagtgtgccctgcaaaggga 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gtcagaggcgcatacagaatcaatcagcccgacatccagtgtgccctgcaaaggga 306


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 815
Length adjustment: 9
Effective length of query: 406
Effective length of database: 806
Effective search space:   327236
Effective search space used:   327236
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)