BAC Information

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BAC

Clone NameMSMg01-456L11
Chromosome15 (Build37)
Map Location 29,459,227 - 29,459,524
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040675, LOC100040689, LOC100040702, LOC667153
Downstream geneLOC382975, Ctnnd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456L11.T7 (MSMg01no456_l11.b1)MSMg01-456L11.TJ (MSMg01no456_l11.g1)
ACCAG542953AG542954
length733765
length of high quality
(start - end)
295 (321 - 615)451 (80 - 530)
definitionCHROMAT_FILE: MSMg01no456_l11.b1 PHD_FILE: MSMg01no456_l11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:38 2005CHROMAT_FILE: MSMg01no456_l11.g1 PHD_FILE: MSMg01no456_l11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXATTTCAAAGAGGATCCGCGGA
ATTCATTACTACCTTAAAATTTTAAAATGAAAATTAAAGTTAACGTGTAA
AAAAAGAAAGCAGTGATAATAATTCTGAATGGTTTTAAAAATCTCAGTGT
GTTTCCTAACTCTGAAGAAAGACACAGATCCTTAAAACTATAATGAAAAA
TATCTGACTTTACTACATGAAATCTTCAAGACAAAAGTGGTTTTTTTTCC
AAAATCAAAAGTAAAAATACAGTTAGAAAATAGAAGAGCATCCAGAACTT
AACATTGAGAGCTCTTATTCCAGGCAAATGTTTAAAATTTCCATATGCAA
AATTCTTATAAATCCAGAGCAATTGTACACTTAATCTAATTTAAATCATA
ATGCAAGGTAATAATAGATTTCACTCAGTAAACTTATGAAGAAAAGCCTA
TGTTTTCTGGCAGCAAGAAGCCAGAGCCTTTACAGCACTCTGGGCCTGTA
GGTGCACACACAACAAGAAAACATCACTAAGTATTGGTGGAAATCACTAA
GTACTGTTGAAAATATGGAAAACTTCAAAGGACAAATAAGTGCCATGGCC
TATCAGTACTCTAGTATGGTGGCCAGTCTTATTTCCCAGTTCTTAAAACA
TATAAAACAATAAACTGTTAGGTTTTCTGAAAGATGATCCCTGGTTTACA
AAACTGCTCATTATCATGTCACCCGAAACTAAA
NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATAAATAGATACTGTTTAAAT
TTGGTTTTTTCGTGTAATATTGTATTTTCTCCATTTATGGTGATTCAAAA
TTTTGCTATGTACAGAAATATGGGCTGGCATCTGTGGTATCTTAGAGACT
GGAAGACATCTATCTAGCCTATTCAGGCTTTTATAATTTCTATTGAAGAG
TCGGGTGTAACTCAAACAGACTTGCCTTTGTGTGTTATTTGGTCTTTTTC
TCTTGTGGCTTTAATATTCTTTCTTTGTTCTACACATTTAATGTTTTGAT
TATTTTGATGCAGGAGGATTTTTGCTAAGGTTCAGCCTTCACCTGAGAGG
CTCCTGAGAAAGCTGTGGATGAGAGAAGAGAAAGAATGATGCAGAGTCAG
TGATTGGTGCAAGGAGACAGCTCTGTAATCTCCTCAAGATAATTCTCTGT
CACAGACTAAAGCCCAGGCTTTTATTTACTACAATTTCATAGACTACTTC
CTTAGAAGTTGCCTAAGAGTTTAATTATTAATCCTAGGTTCTTTTTTTGA
TCCTTCTATGATACCTCTTTTGCCACTTGAATTCTTACACATAGAAAATG
AGATTCCTACGCTCTTGGGGTCAATTGCATCTGACTATCCTGTCTCCCGC
TGGTAAACATTAACTAGGTCTTTTTGGGCCTCCTTTTATATCCCCTGTTT
GTCTTTTTTTTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_l11.b1 MSMg01no456_l11.b1 CHROMAT_FILE:
MSMg01no456_l11.b1 PHD_FILE: MSMg01no456_l11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:38 2005
         (295 letters)



>mm_chr15_29459027_29459724
          Length = 698

 Score =  553 bits (286), Expect = e-162
 Identities = 294/298 (98%), Gaps = 3/298 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggcaaatgtttaaaatttccatatgcaaaattcttataaatccagagcaattgtacac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 caggcaaatgtttaaaatttccatatgcaaaattcttataaatccagagcaattgtacac 439

                                                                       
Query: 61  ttaatctaattta---aatcataatgcaaggtaataatagatttcactcagtaaacttat 117
           |||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ttaatctaatttaaataatcataatgcaaggtaataatagatttcactcagtaaacttat 379

                                                                       
Query: 118 gaagaaaagcctatgttttctggcagcaagaagccagagcctttacagcactctgggcct 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gaagaaaagcctatgttttctggcagcaagaagccagagcctttacagcactctgggcct 319

                                                                       
Query: 178 gtaggtgcacacacaacaagaaaacatcactaagtattggtggaaatcactaagtactgt 237
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 318 gtaggtgcacacacaacaagaaaccatcactaagtattggtggaaatcactaagtactgt 259

                                                                     
Query: 238 tgaaaatatggaaaacttcaaaggacaaataagtgccatggcctatcagtactctagt 295
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tgaaaatatggaaaacttcaaaggacaaataagtgccatggcctatcagtactctagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 698
Length adjustment: 9
Effective length of query: 286
Effective length of database: 689
Effective search space:   197054
Effective search space used:   197054
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)