BAC Information

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BAC

Clone NameMSMg01-459L11
Chromosome15 (Build37)
Map Location 71,069,097 - 71,069,514
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC383051, 1700010C24Rik, LOC100040847, Col22a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-459L11.T7 (MSMg01no459_l11.b1)MSMg01-459L11.TJ (MSMg01no459_l11.g1)
ACCAG545243AG545244
length1,208773
length of high quality
(start - end)
---421 (73 - 493)
definitionCHROMAT_FILE: MSMg01no459_l11.b1 PHD_FILE: MSMg01no459_l11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:44 2005CHROMAT_FILE: MSMg01no459_l11.g1 PHD_FILE: MSMg01no459_l11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACAATCGATCTTTTGTGGACGCAGTATGGTGTTTTCTCAATTAAGGGGCG
CGTGCGACAAGACGGAATTTTTCCCATATTACAGAGAGGGCTGTTTGCTG
TTATCGAGCGCGTTTCGGGCGCCGTTTTGCTTGCGATCGTGCGTCGTTGG
CTGGTGTTTTAGTCGGCGCCGGTTACTTCCNATTACACCCAAATGTCGGA
TGTTAAGTGTGTACCTTGCCTCGTCGTCCGTTTGTGGGTGCGTGCGGGTG
AAGGGGAGAGGCACGATTAATCCCATTTATTTATACGATCAATATTATAC
ACAAATATATAGGGATAAGTAATATGACGCGATGAATTATCGGCGGGGGG
CGCAATAGTAAGGTGCGATACTGCGACAACGTGCTCCGCTCTTTTGCCTC
CTATTCAGTGTCCAGCTGTGCACCACGTAATGCCAAGTTACGAGCGCGGG
TGTTTGTGTTACTTCCTTCGCGGCGTTCGCGCGGCGGGCGGAGATGGACT
TAGATCTTGGGACGAATGTGTTGCGGTGCCCTAGGACGATTCGCGACACC
GCGACGTAGGGCACATCCTAACACCGACCGCGCCGCTCCTATATTAGATA
TTGAATGCAATTATTAAATAAATAATACGGATCTTCGAAACATGTGTACT
CCGTCGTCGGGAGATGTGAATCACCTTGTTGGTTTGCACGCGACGTGCCT
ACGCATATGTGGTAGTTGTTACGCGTTTGATCCGAGTTGGTTTTTTCCCG
AATGCTACGGTTTATGTATCGCTTGCGGGTACGCGACGGTTGTTTGGAAT
TGTTCTTGATTCGACAGCTAAGTACGGAGCGATTACGGGAATCCTTACGA
CACCAATACATCGGTAGTTACATATCTGAGCGCGACAGATCGGATTGCGC
GGTGGCATGCGGGATGGTACAGAGGATTGGACGCGTAGGCATTCGTAACA
CATAGCAGTTATAACTGTGATATGGTGCCACACGTCGTTTTGTCTCACCC
CGATCGCGCGTACTTCGTATACAGCGCCGGTCGTGATGTTGTTTCTTACA
ACGATTATCACCTGATTCGCGGCGTCGCGAGATGATGTACGGTATATCTG
CGTATTCTCGCGACGCGACAGACGTAGCTGGCGCGCGTNACTAGGAGTAT
ATGTGGGAATATTTGTGGAGATGTGCTGGTCCGTCGAGTGAGAAGCGTTN
ATGATAGT
ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAAAGAGTATCGGGAAGTCCCTGCAGAG
TTTACATGACACAATGTTGGCCCCTCTCTCTATTTCCAAGCCTGTCACTC
CATCTCTGTCTATCCTGCTGTGAACAACATAGACTCTGTGCTTGGCACTG
TTTCACACTGTCTTATACTCTGGCAGATAGAGGAATTTTGACTAATTGGA
ACGTTTGGTAACCAGAGAATCAATAACAATGTGTGCTTGGTAGAAAAGGG
ATCTTTACTGAGGGAACTATACTGAGTTTTCTGCTAGATTATTAAATCTC
TTGGACATTCAGCATGTTACTTTTCTACTTTGTTTCAAAGGCAACAAAGA
CAGGTAGAACATAATAGGTTGTTATTCCCAGGACCTCTTTACAGGTTTCT
GATGTAAGTAAGCATGCCTTTGCCTGCCACTGGCAAGACTGTCTGGNATT
TCTCTCTCAGTCTTTCAATCTATCCGCTCCATATGAAAAGAAAATGTGTT
TTATCCAAGGGATTTGCGTTGCCCGATGCCAGGCTATTGTTATATGAAAT
AACTCCCCAAAGGAAATATTAATATGGAATGCCCACTCTTTTCCCCTACT
TTTTGCCCCCTCCTCTTTTTATTTTCTCCCCTAAAATCCTCCTTTTTTAA
CTACCAATCTTTTTTTTTTAAAAATAACTCCCCTCTTTGATATCTCCTCT
CTCTTTACCCTCCTTTTTCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no459_l11.g1 MSMg01no459_l11.g1 CHROMAT_FILE:
MSMg01no459_l11.g1 PHD_FILE: MSMg01no459_l11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:32:45 2005
         (421 letters)



>mm_chr15_71068897_71069717
          Length = 821

 Score =  770 bits (398), Expect = 0.0
 Identities = 413/418 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaagagtatcgggaagtccctgcagagtttacatgacacaatgttggcccctctctcta 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 caaagagtattgggaagtccctgcagagtttacatgacacaatgttggcccctctctcta 559

                                                                       
Query: 61  tttccaagcctgtcactccatctctgtctatcctgctgtgaacaacatagactctgtgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tttccaagcctgtcactccatctctgtctatcctgctgtgaacaacatagactctgtgct 499

                                                                       
Query: 121 tggcactgtttcacactgtcttatactctggcagatagaggaattttgactaattggaac 180
           ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 498 tggcactgttttacactgtcttatactctggcagatagaggaattttgattaattggaac 439

                                                                       
Query: 181 gtttggtaaccagagaatcaataacaatgtgtgcttggtagaaaagggatctttactgag 240
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 438 gtttggtaaccagagaatcaataacaatgtgtgcttggtagaaaagagatctttactgag 379

                                                                       
Query: 241 ggaactatactgagttttctgctagattattaaatctcttggacattcagcatgttactt 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ggaacaatactgagttttctgctagattattaaatctcttggacattcagcatgttactt 319

                                                                       
Query: 301 ttctactttgtttcaaaggcaacaaagacaggtagaacataataggttgttattcccagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ttctactttgtttcaaaggcaacaaagacaggtagaacataataggttgttattcccagg 259

                                                                     
Query: 361 acctctttacaggtttctgatgtaagtaagcatgcctttgcctgccactggcaagact 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 acctctttacaggtttctgatgtaagtaagcatgcctttgcctgccactggcaagact 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 821
Length adjustment: 9
Effective length of query: 412
Effective length of database: 812
Effective search space:   334544
Effective search space used:   334544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)