BAC Information

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BAC

Clone NameMSMg01-460D09
Chromosome15 (Build37)
Map Location 42,835,653 - 43,041,995
singlet/doubletdoublet
Overlap geneRspo2
Upstream geneLOC432947, LOC100039268, LOC100039197, Angpt1
Downstream geneLOC675960, Eif3s6, Ttc35, LOC100039288, Tmem74, LOC100039309, Trhr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-460D09.T7 (MSMg01no460_d09.b1)MSMg01-460D09.TJ (MSMg01no460_d09.g1)
ACCAG545622AG545623
length709706
length of high quality
(start - end)		592 (63 - 654)565 (70 - 634)
definitionCHROMAT_FILE: MSMg01no460_d09.b1 PHD_FILE: MSMg01no460_d09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:23 2005CHROMAT_FILE: MSMg01no460_d09.g1 PHD_FILE: MSMg01no460_d09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,835,653 - 42,836,244)(43,041,437 - 43,041,995)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCATTATCACAAGATGGTACTAAATCAGTCATGGTCAGCAGTACTCCA
GATACTTCAATTTAGAGGCTCTGCCTTCTGCCTAAGAACAAAATAATTAA
ACTTATCTTAGATGCAAAATCGCATAATCTTCCATCCTAATACCTACATA
GTATAAATCCATGTATAGCTTTCTTTTATCCTTTCAGTAATTTTGACACA
AAATCATGCAGTTATCATCAAAGTAATCTGTCCCTCAGAAATTAGATATG
ACTAGATTTGGAATAATGCTGCCTCAACATCGCTAATATTCTCTAATACA
TTTAAAAATCTATATCCTACCCACGTTTTCAGATTGGTTTGTGCTTCTGT
GTCTTAGAATAGCTAAGTAAGGAGTAGTACAGAATCCCCCAATATCGCCT
ATGTTTTCCATGTTTCCAAAGTAACACGTGTTACCTTTAAAGATCTTCTA
GCTGCCAGTTCTATTCTCTAAGAAGATGTAAATGGATTTGGATTTCATTC
GTGTCCAGCTACTGCTAACAAAATGCATCATTTTTCTTTAAGTCAGGTAG
CACAAAATATTCAGTAGATAGTCCTAAAATCCCAAACTACAAGTACATAT
CTAAAGTGTGCGGGTCAATTTTAACTCAGAAACTCTCTAGACAGTCAAAT
CTCAGTTTC

GATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTTTGGCCTGAATTTCAAAAGTGTGATTTTA
TGGAATCCTAATATTAATATCTTTTCTATGACCAGCAACGATAATGGTAT
GCATATGTCTAAAGAGGTAAACTCATTTGTTTCCCTAGAATTTAGTAGTC
TCACTAAATGCTTCTGTGAACATTTTAAAAATCACCTAGATTTTCATTAT
CAAAGTCCCAATGTTGAACATAAGCACATTACCCACTCATCTTTTAAAAA
TAATGTTTGTGTGCAGTGTGTATAACATTTTCAAATTTAATATTTTTATT
TTTATGATAGTATGTTTATAGACTGAGTAGGGATTTATAAAAATTATATC
TGTCCAACTATGGTTCCATAGACAAATGAGCAAAATCTGCTATTATTAGA
ACATGATATCAGCTCTCCTTTTTCTGAAATTTCATTAGAATGTGAAAATC
AAGATGATGTTTTGATTTGGAGTTCCATTTTTCAAATCAAAACTCCTAAG
AACAGAAAACCAGATACCATTGTTCTGCTAAGAGAACGTGGCAATAAAAT
GACTCCTAAAGACATTCTGTTGTACCAAAAGATCAGCGCCTTGTTGATTA
TCAGAGACACGTCCTCCTGCAGTGGATGTGAACAAATACAGAGGTCCACA
TCTGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no460_d09.b1 MSMg01no460_d09.b1 CHROMAT_FILE:
MSMg01no460_d09.b1 PHD_FILE: MSMg01no460_d09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:23 2005
         (592 letters)



>mm_chr15_42835453_42836444
          Length = 992

 Score = 1137 bits (588), Expect = 0.0
 Identities = 591/592 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagatggtactaaatcagtcatggtcagcagtactccagatacttcaatttagaggctct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagatggtactaaatcagtcatggtcagcagtactccagatacttcaatttagaggctct 260

                                                                       
Query: 61  gccttctgcctaagaacaaaataattaaacttatcttagatgcaaaatcgcataatcttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gccttctgcctaagaacaaaataattaaacttatcttagatgcaaaatcgcataatcttc 320

                                                                       
Query: 121 catcctaatacctacatagtataaatccatgtatagctttcttttatcctttcagtaatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catcctaatacctacatagtataaatccatgtatagctttcttttatcctttcagtaatt 380

                                                                       
Query: 181 ttgacacaaaatcatgcagttatcatcaaagtaatctgtccctcagaaattagatatgac 240
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 381 ttgacacaaaatcatgcagttatcatcaaagtaatctgtctctcagaaattagatatgac 440

                                                                       
Query: 241 tagatttggaataatgctgcctcaacatcgctaatattctctaatacatttaaaaatcta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tagatttggaataatgctgcctcaacatcgctaatattctctaatacatttaaaaatcta 500

                                                                       
Query: 301 tatcctacccacgttttcagattggtttgtgcttctgtgtcttagaatagctaagtaagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatcctacccacgttttcagattggtttgtgcttctgtgtcttagaatagctaagtaagg 560

                                                                       
Query: 361 agtagtacagaatcccccaatatcgcctatgttttccatgtttccaaagtaacacgtgtt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agtagtacagaatcccccaatatcgcctatgttttccatgtttccaaagtaacacgtgtt 620

                                                                       
Query: 421 acctttaaagatcttctagctgccagttctattctctaagaagatgtaaatggatttgga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acctttaaagatcttctagctgccagttctattctctaagaagatgtaaatggatttgga 680

                                                                       
Query: 481 tttcattcgtgtccagctactgctaacaaaatgcatcatttttctttaagtcaggtagca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tttcattcgtgtccagctactgctaacaaaatgcatcatttttctttaagtcaggtagca 740

                                                               
Query: 541 caaaatattcagtagatagtcctaaaatcccaaactacaagtacatatctaa 592
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 caaaatattcagtagatagtcctaaaatcccaaactacaagtacatatctaa 792


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 992
Length adjustment: 10
Effective length of query: 582
Effective length of database: 982
Effective search space:   571524
Effective search space used:   571524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no460_d09.g1 MSMg01no460_d09.g1 CHROMAT_FILE:
MSMg01no460_d09.g1 PHD_FILE: MSMg01no460_d09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:23 2005
         (565 letters)



>mm_chr15_43041031_43041995
          Length = 965

 Score = 1065 bits (551), Expect = 0.0
 Identities = 557/559 (99%)
 Strand = Plus / Minus

                                                                       
Query: 7   cctgaatttcaaaagtgtgattttatggaatcctaatattaatatcttttctatgaccag 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 965 cctgaatttcaaaagtgtgattttatggaatcctaatattaatatcttttctatgaccag 906

                                                                       
Query: 67  caacgataatggtatgcatatgtctaaagaggtaaactcatttgtttccctagaatttag 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 905 caacgataatggtatgcatatgtctaaagaggtaaactcatttgtttccctagaatttag 846

                                                                       
Query: 127 tagtctcactaaatgcttctgtgaacattttaaaaatcacctagattttcattatcaaag 186
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 845 tagtctcactaaacgcttctgtgaacattttaaaaatcacctagattttcattatcaaag 786

                                                                       
Query: 187 tcccaatgttgaacataagcacattacccactcatcttttaaaaataatgtttgtgtgca 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 tcccaatgttgaacataagcacattacccactcatcttttaaaaataatgtttgtgtgca 726

                                                                       
Query: 247 gtgtgtataacattttcaaatttaatatttttatttttatgatagtatgtttatagactg 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 gtgtgtataacattttcaaatttaatatttttatttttatgatagtatgtttatagactg 666

                                                                       
Query: 307 agtagggatttataaaaattatatctgtccaactatggttccatagacaaatgagcaaaa 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 agtagggatttataaaaattatatctgtccaactatggttccatagacaaatgagcaaaa 606

                                                                       
Query: 367 tctgctattattagaacatgatatcagctctcctttttctgaaatttcattagaatgtga 426
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 605 tctgctattattagaacatgatatcagctctcttttttctgaaatttcattagaatgtga 546

                                                                       
Query: 427 aaatcaagatgatgttttgatttggagttccatttttcaaatcaaaactcctaagaacag 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 aaatcaagatgatgttttgatttggagttccatttttcaaatcaaaactcctaagaacag 486

                                                                       
Query: 487 aaaaccagataccattgttctgctaagagaacgtggcaataaaatgactcctaaagacat 546
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aaaaccagataccattgttctgctaagagaacgtggcaataaaatgactcctaaagacat 426

                              
Query: 547 tctgttgtaccaaaagatc 565
           |||||||||||||||||||
Sbjct: 425 tctgttgtaccaaaagatc 407


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space:   530025
Effective search space used:   530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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