BAC Information

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BAC

Clone NameMSMg01-460H08
Chromosome15 (Build37)
Map Location 100,213,804 - 100,214,278
singlet/doubletsinglet
Overlap geneLOC554292, Yghl1-4
Upstream geneTegt, C230021P08Rik, 4930556P03Rik, Faim2, LOC545137, Aqp2, Aqp5, Aqp6, Racgap1, LOC100043473, Accn2, Smarcd1, Gpd1, 2310016M24Rik, Lass5, Lima1, LOC100043481, LOC100042918, 1700030F18Rik, Gm920, D330037H05Rik, 4930478M13Rik, Dip2b, Atf1, 4930478A21Rik, EG432981, Mettl7a, ENSMUSG00000058057, Ubie
Downstream geneSlc11a2, EG432982, Letmd1, BC035295, Tcfcp2, Pou6f1, Dazap2, BC004728, Bin2, Ela1, Galnt6, Slc4a8, Scn8a, EG668225, Ankrd33, Acvrl1, Acvr1b, Grasp, Nr4a1, 9430023L20Rik, 6030408B16Rik, Krt80
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-460H08.T7 (MSMg01no460_h08.b1)MSMg01-460H08.TJ (MSMg01no460_h08.g1)
ACCAG545811AG545812
length759725
length of high quality
(start - end)
284 (63 - 346)459 (70 - 528)
definitionCHROMAT_FILE: MSMg01no460_h08.b1 PHD_FILE: MSMg01no460_h08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:42 2005CHROMAT_FILE: MSMg01no460_h08.g1 PHD_FILE: MSMg01no460_h08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TGGGTCACTTTCAGAGGGTATATAAATGCTAGGGCCCCAGAGGTGGAGGC
TTGTTGGTTGGTGGTTGCTGTCATTCCTGGTTGCAGTTTGATGCGTAGTT
CACGTGTGAAGATAAAACAAGAAGAAATGAGATATTCTGGTGGCAAAGAT
TGAACTTGCCCCAGGAACCAATGGATGGATGCCTCTCATCAGGAAGTAGT
CTATAATGTTACCTTTGCTGTCTTTTTTCTGGGATCACTTTTTCTTTCTA
TCCTATCTTTTGTTAGGAGGTTGAGGGGGTGGAAGAGAGAAGAACCCACA
AAGTTGTTGTGTTAAATATAAAAAGACCAGTGATTTGCCGTCTGGCGGTC
TCGTGTCTCCAGCATGATGTTCTCATCTCAAATACTCTCCTGACTCTGAC
CTCCCTATTTCTCTCCCCCAGCTTCCCATCGTCTCTCGTTTGGTATCGCT
ATTTCTCTTATCTCTTTGCTCTTAATTCTTTCTTGTCTTTTTGTTATGTT
CCTTTGTGCCTTCCCCTCCCTTAACTCTCCTGAAATCTTCCTTCTCTCAA
TATTTGATTTATTTTCCCTGTCTTTTATGTCTATCAGCGCTTTCACCTTC
TTCTCTCTCTTCACTTTTATCTTATTCCTCCTTCTCTCTTCCTTCTTCAT
TCCTTTAATATCCTCCTTATATTCCTATATCTTTCATCTCTTTTTCCACC
CTCTTCTTN
GCTGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTTTTTCTGATGCTAGCACTGAAGGAGCCGG
CCGTCCTTGCTTCCAGCTTCTGGCTTTACTTTTTGGGTACATTGAAGAAC
CGAGGTCTGATATAGTCCTTATACATAGAGTAGAGAACACCTGGAGAAGA
AAGTCACCCACAATCAGTAGTGTCCGTGAGAAGCAAACACTGACATTTTC
CCACACGCTTTTCCAAAACGAGCACACTATTGCAAAAGAAAAGGACAAAC
AAAACTCAGTAAGCAAGGCTCCGCTCACCCAGCGGCTGCAGAATCAAATA
ACACTTAAGTATTTTGGATCAGCATCGACGCAGGCATATGCACATGTGCA
CACACAAACCCAAACTCATAAAAACACAAATTCTGTAAAAAAACATAAAT
TTAAAAGACAATAATACTTTGAACTTAAGCTGTCATAACAAAGTTTTTGT
TTTGTTTGTTTTCTTGAGTCAAGTGTTTCTCTGTGTAGCCCTGAATGTCC
TAAAACTCACCACATAGACCAGGGTGGCTTTTGAACTATAGAGGTCTGGC
TGCCTCTGCCTTCCAAGTGGTGGGGATTAAAAGTGTGTGCCCCCCAGGGT
GGGGTTTAACTCATGGTTGGGTTGGAAATCGGGGAAACCTTGGTGCCCCC
TTGGGTATAAATTCCGTTGCGCCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no460_h08.g1 MSMg01no460_h08.g1 CHROMAT_FILE:
MSMg01no460_h08.g1 PHD_FILE: MSMg01no460_h08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:42 2005
         (459 letters)



>mm_chr15_100213656_100214516
          Length = 861

 Score =  841 bits (435), Expect = 0.0
 Identities = 458/475 (96%), Gaps = 16/475 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctttttctgatgctagcactgaaggagccggccgtccttgcttccagcttctggctttac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ctttttctgatgctagcactgaaggagccggccgtccttgcttccagcttctggctttac 564

                                                                       
Query: 61  tttttgggtacattgaagaaccgaggtctgatatagtccttatacatagagtagagaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tttttgggtacattgaagaaccgaggtctgatatagtccttatacatagagtagagaaca 504

                                                                       
Query: 121 cctggagaagaaagtcacccacaatcagtagtgtccgtgagaagcaaacactgacatttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 cctggagaagaaagtcacccacaatcagtagtgtccgtgagaagcaaacactgacatttt 444

                                                                       
Query: 181 cccacacgcttttccaaaacgagcacactattgcaaaagaaaaggacaaacaaaactcag 240
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 cccacacacttttccaaaacgagcacactattgcaaaagaaaaggacaaacaaaactcag 384

                                                                       
Query: 241 taagcaaggctccgctcacccagcggctgcagaatcaaataacacttaagtattttggat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 taagcaaggctccgctcacccagcggctgcagaatcaaataacacttaagtattttggat 324

                                                                       
Query: 301 cagcatcgacgcaggcatatgcacatgtgcacacacaaacccaaactcataaaaacacaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 cagcatcgacgcaggcatatgcacatgtgcacacacaaacccaaactcataaaaacacaa 264

                                                                       
Query: 361 attctgt--aaaaaaacataaatttaaaagacaataatactttgaacttaagctgtcata 418
           |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 attctgtaaaaaaaaacataaatttaaaagacaataatactttgaacttaagctgtcata 204

                                                                  
Query: 419 ac--------------aaagtttttgttttgtttgttttcttgagtcaagtgttt 459
           ||              |||||||||||||||||||||||||||||||||||||||
Sbjct: 203 acaccatccccaaattaaagtttttgttttgtttgttttcttgagtcaagtgttt 149


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 861
Length adjustment: 10
Effective length of query: 449
Effective length of database: 851
Effective search space:   382099
Effective search space used:   382099
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)