Query= MSMg01no460_k09.b1 MSMg01no460_k09.b1 CHROMAT_FILE:
MSMg01no460_k09.b1 PHD_FILE: MSMg01no460_k09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:57 2005
(587 letters)
>mm_chr15_11885351_11886337
Length = 987
Score = 1094 bits (566), Expect = 0.0
Identities = 578/582 (99%)
Strand = Plus / Plus
Query: 6 aatagaaagacagcatatagtttaggagaatttggactcactcataatgcatgccccttc 65
|||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 206 aatagaaagacagcatgtagtttaggagaatttggactcactcatattgcatgcccattc 265
Query: 66 atttttatttgtagaacagccaaatcattataaaagtcaccctcacgtccctctgggcta 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 atttttatttgtagaacagccaaatcattataaaagtcaccctcacgtccctctgggcta 325
Query: 126 aatactaatgtctaattatgcaaagttgtttgtattcacctttaggtcaaatctgggccg 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 aatactaatgtctaattatgcaaagttgtttgtattcacctttaggtcaaatctgggccg 385
Query: 186 tgggtatcattcttatggttactaataatggtaattgattgttgggcccaaagaattgtc 245
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tgggtatcattcttatgattactaataatggtaattgattgttgggcccaaagaattgtc 445
Query: 246 agaaggggacttttggtcctaggaggagacttaggtccctctggcagccttacaatctaa 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 agaaggggacttttggtcctaggaggagacttaggtccctctggcagccttacaatctaa 505
Query: 306 attagactgtgttgtataacagtattaggcatctgatacgggacttgccaaatttcatgg 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 attagactgtgttgtataacagtattaggcatctgatacgggacttgccaaatttcatgg 565
Query: 366 cttcaggctcacggaatgtacatccctgttccagggaggctaaatatttttccaaatcag 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 cttcaggctcacggaatgtacatccctgttccagggaggctaaatatttttccaaatcag 625
Query: 426 tagataaaacaaactccctgacctcaacttacttcctggcgcctggagtcctgagtagct 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 tagataaaacaaactccctgacctcaacttacttcctggcgcctggagtcctgagtagct 685
Query: 486 catgaggagtgtctgtctgctatcaagtgacaggacacattcagactggctcctgcactc 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 catgaggagtgtctgtctgctatcaagtgacaggacacattcagactggctcctgcactc 745
Query: 546 gggaccgtgtggtacctgatccccgtctccatcttcagagct 587
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 gggaccgtgtggtacctgatccccgtctccatcttcagagct 787
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space: 563729
Effective search space used: 563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no460_k09.g1 MSMg01no460_k09.g1 CHROMAT_FILE:
MSMg01no460_k09.g1 PHD_FILE: MSMg01no460_k09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:57 2005
(567 letters)
>mm_chr15_11894997_11895964
Length = 968
Score = 1083 bits (560), Expect = 0.0
Identities = 566/568 (99%), Gaps = 1/568 (0%)
Strand = Plus / Minus
Query: 1 aggacctctgcttattctggccatgctcactctagcccaaagatttatttatttattata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 aggacctctgcttattctggccatgctcactctagcccaaagatttatttatttattata 677
Query: 61 tataagtacactgtagcttcaggcacacctgaagagggcgtcagatctcattatggatgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 tataagtacactgtagcttcaggcacacctgaagagggcgtcagatctcattatggatgg 617
Query: 121 ttgtgagccaccatgtggttgctgtgatctgagctcaggacctttggaagagcagtcagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 ttgtgagccaccatgtggttgctgtgatctgagctcaggacctttggaagagcagtcagt 557
Query: 181 gctcttatccagagccagctcaccagcccgacttcaaaa-tttttttttattgtatttgt 239
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 556 gctcttatccagagccagctcaccagcccgacttcaaaattttttttttattgtatttgt 497
Query: 240 ttaatgtgcacacacacatgtgcacatgaatgagggggaaagagagagatagagatacag 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 ttaatgtgcacacacacatgtgcacatgaatgagggggaaagagagagatagagatacag 437
Query: 300 agatacagagagtacacaagcatgcctgcccatgtcgcagcgagcatgtggaggtcagag 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 agatacagagagtacacaagcatgcctgcccatgtcgcagcgagcatgtggaggtcagag 377
Query: 360 gacaacttatgatggttctcttcttccacaatgcaggtcttggcaagtgctgagccatgt 419
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gacaacttatgatggttcccttcttccacaatgcaggtcttggcaagtgctgagccatgt 317
Query: 420 ctctggtcccataaacaaaatgatcttatttaattactttgtgttttgagagtttatttg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 ctctggtcccataaacaaaatgatcttatttaattactttgtgttttgagagtttatttg 257
Query: 480 gagggtctatcaagagatgaaagctacttgaatacccttggcccccctctactggggaag 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 gagggtctatcaagagatgaaagctacttgaatacccttggcccccctctactggggaag 197
Query: 540 gtccagccaacagaatggctttggaagg 567
||||||||||||||||||||||||||||
Sbjct: 196 gtccagccaacagaatggctttggaagg 169
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 968
Length adjustment: 10
Effective length of query: 557
Effective length of database: 958
Effective search space: 533606
Effective search space used: 533606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
