BAC Information

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BAC

Clone NameMSMg01-460N22
Chromosome15 (Build37)
Map Location 91,029,068 - 91,029,313
singlet/doubletsinglet
Overlap genenone
Upstream geneAlg10b, Cpne8, EG627342, LOC100042462, LOC100042471, EG667682, Tcea1-ps1, Spn-ps, Kif21a, EG635871, Abcd2
Downstream geneLOC545126, Slc2a13, Lrrk2, Muc19, Smgc, LOC100042529, Cntn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-460N22.T7 (MSMg01no460_n22.b1)MSMg01-460N22.TJ (MSMg01no460_n22.g1)
ACCAG546125AG546126
length829734
length of high quality
(start - end)
252 (44 - 295)448 (71 - 518)
definitionCHROMAT_FILE: MSMg01no460_n22.b1 PHD_FILE: MSMg01no460_n22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:15 2005CHROMAT_FILE: MSMg01no460_n22.g1 PHD_FILE: MSMg01no460_n22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCACCTGTTATGATTCCATTACAGATAAAATGTGGTAGGGGTTGTTGTC
GTTATAAAATTAGGATTAATGTTTTTAAATAAGATGTATTTATTTTAGTT
ACTAGTTCTTCAAAACTTAGATAAATATTACATTTTGACAATTTTTTTTT
TCTGGAAGAAATCATGGCAATTTGAAAACTTACTTTATTTGGAAAAAGGA
ACTTCATGTTTTTTTTTTGTTGTTGGTGGTTTTTTGTTTTTGCTTCTTTG
TCTATCGGTCTTTTTTTTATGCTCCGTTTTTGTGCTCGGTGTGCGGTCCT
GTTTTCTTGTTTCTTTTTGTCTAGTCTCGCGTCCCCCGCTGTTTTCTCGC
TTACTCACCGATTACTTTTTCTCCCCGCACTTTCCCCTTGCTTTCTTCTG
CTTTTTGTCTCGTCCATCCTCCGTTATACTTTTTTCTCCTCCTTTCCTAT
ATCTCCTTCCGTTTTTTATTTTATCTCCTCCGCCCTTTTCTCTTTGATTC
TTTTCTCACTGATCTTCATTTTTTTTTGTCACCTTTTATGTTCCTTATCT
CCTTGCCGTACCTTTCTCTTTCCCCTATTCTTCCCATTCCTTCTCTCCCA
TTTTCTCGTCTTTTTATGCCTTCTCTTTATTCTCCTCATCCCTCTCGTTG
ATCCCCTTTTTTTCATATTTATCTCTATTTTCCATTGCTCACATTGTTGA
TTTTCCTCTATTTTTTATTCTCCTTTTATTTCACTGATATTATCATCTCA
CTTTCTCCGCGTTTTATCATTTTCTCTTA
ATATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTTGTATACTTTGGATATTAGTCTCTATCA
GATGTATGGATAGGGAAGATCTTTTCCCAATTTGTAGGTTTCTGTCTTAT
CTTATTGACAGTATCCTTTGCAGAAGGAAGAGAGAAGGAAGAAACTGGAC
AGGAGAGGGAAGGAGGGAGGGCAAAAGAAGGGGAAAGATCAGGTATGGGA
GAAACAGGAGGGATGCCCATAGGACCAGGGGAATGAATCAAAATGTGCAG
CAGTAGGAGTTAGGGGGCAGGGAGAACCTCTATAAAGTTTCAGAGTCCTG
GGATGTAAGAGGCTACCAGGACTTAATGGGGATGACATTAGTCGAAGTGC
CCAACAGTGGGAAGATGGAACCAGAAGAGACCTCCTCCAGCATATAGACA
TGGTCCCCAGTGGAGGCAAGGGGCTGCCTACCCATCTCCAAAATTTTTAA
CCCAGAATCGTTCCTGTCTAAAGGAAATGCAGGGACAAAATTGGAGCATA
GATGGAAAGAAAGGCCACCCCGTGGACTACCCCACTTGGGATTCATTCCA
TGTGGACTCACCAAACCCCTGAACCTATTAATGAAATCCTTATTTTGGTT
TGCGAATAGTAGCCCGGCCAGGGTTGTCCCTCTTAAAAAGTTCTACCATG
TTCCGGAATTGTAAACAAACGGCAAAAACTTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no460_n22.b1 MSMg01no460_n22.b1 CHROMAT_FILE:
MSMg01no460_n22.b1 PHD_FILE: MSMg01no460_n22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:34:15 2005
         (252 letters)



>mm_chr15_91028864_91029516
          Length = 653

 Score =  424 bits (219), Expect = e-123
 Identities = 239/247 (96%), Gaps = 5/247 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacctgttatgattccattacagataaaatgtggtaggggttgttgtcgttataa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacctgttatgattccattacagataaaatgtggtaggggttgttgtcgttataa 264

                                                                       
Query: 65  aattaggattaatgtttttaaataagatgtatttattttagttactagttcttcaaaact 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aattaggattaatgtttttaaataagatgtatttattttagttactagttcttcaaaact 324

                                                                       
Query: 125 tagataaatattacattttgacaattttttttttctggaagaaatcatggcaatttgaaa 184
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 325 tagataaatattacattttgacaattttttttt-ctggaagaaatcatggcaatttgaaa 383

                                                                       
Query: 185 acttactttatttggaaaaaggaacttcatgttttttttttgttgt--tggtggtttttt 242
           ||||||||||||||||||||||||||||||||||||| || || ||  ||||||||||||
Sbjct: 384 acttactttatttggaaaaaggaacttcatgttttttgttggtggtggtggtggtttttt 443

                  
Query: 243 --gtttt 247
             |||||
Sbjct: 444 tggtttt 450


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 653
Length adjustment: 9
Effective length of query: 243
Effective length of database: 644
Effective search space:   156492
Effective search space used:   156492
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)