BAC Information

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BAC

Clone NameMSMg01-461F02
Chromosome15 (Build37)
Map Location 18,785,256 - 18,785,610
singlet/doubletsinglet
Overlap geneCdh10
Upstream geneLOC100040162, LOC666835, LOC666839
Downstream geneEG666857, EG666875, LOC621884, LOC100040265
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-461F02.T7 (MSMg01no461_f02.b1)MSMg01-461F02.TJ (MSMg01no461_f02.g1)
ACCAG546469AG546470
length739742
length of high quality
(start - end)
163 (115 - 277)355 (82 - 436)
definitionCHROMAT_FILE: MSMg01no461_f02.b1 PHD_FILE: MSMg01no461_f02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:52 2005CHROMAT_FILE: MSMg01no461_f02.g1 PHD_FILE: MSMg01no461_f02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACCCTTTTCTATATTTGCGGCCGTTATATGAATCACTATTCCCAGXXXXX
XXXXXXXXXXXXXXXXTTTCCCCAACCTGGAAGTGAAAACTGAAGTAGCG
CCATGTAGAAACACAGCTTACTGGTTCACTCCTAATGGCTTGCTTAGATT
TCGTTCTGTGCAACGTAAGAATCACTTGTCTGTATGAGTTTTACTACCTC
ATCGTTACTCCCTACCCTTCAGTGGGCTGGTAACACCCACTTCAATCATA
TCTTGAAAATGCCATACATACTTGCACACATGCATTCCAAGGGAAGCAAG
TTCTCATGTGAAATACCTCTTGTGTCTAACTGACAGAAAATGATCTTCCA
CAATTGATCTCTTGTCTACTTAAGATATAATCATGTCACCTATTAAATAA
TAACTTTTCTTCTTTTATTGACCCCATATATCTGATATTATCTACAGATT
CCTTGTGCCTCAAGTTTTCATACTTTTTCCCAAACCTCTAATATTCATTA
TTTCCCTCCTGTATCACGATCACATTGCAATACTTGACACTTTATCTCCC
ATCCCCGGCACCTTATTATTTTAACTGTTTCGTCATTCTAAACTTTACTA
CCTAATTTCATATTTTTGCTTTTTTCTCTTCTTATTAACCTCCCCTCCAC
TCACCTCTTGCTCTTGTCACTTCTTTCCTTTTAATTTTTATTTTTCATAC
CTCCTCTTTTCTCTCTCCCATACCCCCCTCTTTTTTTTC
TCCCCACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAGCAAGCACATCTCTCA
CTGATAAGTCCATCAAATATATTCAAAGATTTCTAATAAAATATTAATTA
TGTTGAGAAAATGTCACAGACAAGACACATACCATTCTATACCTGGAACA
CATCAGCAAGTTGAAATTATTTGCAGCTGAATATCAGTTGCTTGGCCAAA
GAAATTAAATGTTTTTTTCCAGGGGATTTTAGTGAATCTGGGTAAAACAG
TTAGTGAATCTGGGTAAAACAATAGTAAAATTTATTGTCTCTGTTAAATA
GAAGGCCAAATGTTCCTTGTTGCTGCCTGATGCCCCAAATCAGGTTTTCT
TCTCCCCAGTATACAATCGCGCCTTTTACAGTTGTAATATTCATCACTCT
TGTAAAAACAGCCATTGGAAACTTATGTTAGGCCCTCACATGCGGATGAC
CAAAACCTCTGGTATAGAGACTATCACCTAGCCGTTAGTGAGTATTGACC
GAATTGCCACCCCTGAACCTTTTTCTGTCCCCGCTTTTTGTTGTCTCTTG
CTTTCTTATTTTTTTTGTTTCCTCCCTCCCTCCTTCCCGCTTTCCTTCTC
TCCCCTCTCCCGTTATTTACTCCTTTCGCTCTATCTCCTATTTACTTTAC
TCTTTTTTCTTTTCCCTTATTCTACCCTTACTTGTTTCACCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no461_f02.g1 MSMg01no461_f02.g1 CHROMAT_FILE:
MSMg01no461_f02.g1 PHD_FILE: MSMg01no461_f02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:34:52 2005
         (355 letters)



>mm_chr15_18785056_18785810
          Length = 755

 Score =  648 bits (335), Expect = 0.0
 Identities = 350/355 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caagcaagcacatctctcactgataagtccatcaaatatattcaaagatttctaataaaa 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caagcaagcacaactctcactgataagtccatcaaatatattcaaagatttctaataaaa 260

                                                                       
Query: 61  tattaattatgttgagaaaatgtcacagacaagacacataccattctatacctggaacac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tattaattatgttgagaaaatgtcacagacaagacacataccattctatacctggaacac 320

                                                                       
Query: 121 atcagcaagttgaaattatttgcagctgaatatcagttgcttggccaaagaaattaaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atcagcaagttgaaattatttgcagctgaatatcagttgcttggccaaagaaattaaatg 380

                                                                       
Query: 181 tttttttccaggggattttagtgaatctgggtaaaacagttagtgaatctgggtaaaaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttttttccaggggattttagtgaatctgggtaaaacagttagtgaatctgggtaaaaca 440

                                                                       
Query: 241 atagtaaaatttattgtctctgttaaatagaaggccaaatgttccttgttgctgcctgat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct: 441 atagtaaaatttattgtctctgttaaatagaaggccaaatgttccttgttgttgcccgat 500

                                                                  
Query: 301 gccccaaatcaggttttcttctccccagtatacaatcgcgccttttacagttgta 355
           |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 501 gccccaaatcaggttttcttctccccagtatacaatcgtgccttttacagctgta 555


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 755
Length adjustment: 9
Effective length of query: 346
Effective length of database: 746
Effective search space:   258116
Effective search space used:   258116
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)