BAC Information

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BAC

Clone NameMSMg01-464P10
Chromosome15 (Build37)
Map Location 74,523,168 - 74,719,880
singlet/doubletdoublet
Overlap geneJrk, 4933427E11Rik, Psca, 4930572J05Rik, Slurp1, Lypd2, 2300005B03Rik, Lynx1, Ly6d, D730001G18Rik, Ly6k, Gml, Hemt1, Cyp11b1, Cyp11b2, 2010109I03Rik
Upstream geneGpr20, LOC100040946, pPtp4a3, Gm628, LOC100041273, EG625276, LOC100040966, EG666113, LOC100041307, LOC100040984, Bai1, 1700016M24Rik, Arc
Downstream geneLOC625653, Ly6e, Ly6i, LOC666240, LOC100041528, Ly6a, Ly6c, LOC546642, EG625737, LOC100041546, I830127L07Rik, LOC100041070, LOC546644, LOC100041087, BC025446, LOC100041092, Ly6f, LOC100041652, LOC100041107, 9030619P08Rik, Ly6h, Gpihbp1, Zfp41, 2810039B14Rik, Top1mt, Rhpn1, Mafa, Zc3h3, LOC672572, Gsdmdc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-464P10.T7 (MSMg01no464_p10.b1)MSMg01-464P10.TJ (MSMg01no464_p10.g1)
ACCAG549255AG549256
length740733
length of high quality
(start - end)
124 (128 - 251)191 (376 - 566)
definitionCHROMAT_FILE: MSMg01no464_p10.b1 PHD_FILE: MSMg01no464_p10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:53 2005CHROMAT_FILE: MSMg01no464_p10.g1 PHD_FILE: MSMg01no464_p10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,719,758 - 74,719,880)(74,523,168 - 74,523,358)
sequence
GAACTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCATACCTATCCG
CNGGAANCCAGGTTTTCAAACAAACCACACCCTGNCTAAGCAAGGAAAGT
GCAGAATGATTAGGAAGACTCTCCACGTTGACTTCCGGCTTTCACTGTCA
TGTGTACACCTATTCCCGTGTAAGCGCACACATTAGGACCTGAAAGGATC
TAATGCTTACATTGAGGGCTGGTCCTTAGCCTAGAGAGAGTTCACGATGA
TTTTTTTACAAACCCTGAGGAAAAGATGGTTTCCAGAGTCGCCACACTGT
TAGATTCAAATGTTAAATTCCCTANTTCCAAATCCCAGGNTTTATAAAGA
AACATATATCCCATTTGAAGGAACAGCAACAAAATCTTCACAGAAACTTT
GCTTGAGAACGGCAAGATGGCAGACACATTATATACAGACACTCTCTTAA
AAGTGCCCAGAGAGCTGAGGGAAGATGCGGGGAGAACATGAGAAAAGACA
AACGGAGCCCACCTGACGTGCAGAAGGAAGTCTTTGGAAACGGATAGCTG
ATGCCAGCTAAAGGCATCTCCAGGGTACAATCAAGACTCCAGTGACTAGA
CCAAGGACCTGAACAGTGCATTAAAGGTACGATAACCAGAGAATCCCATG
TTTTCTCTCCTATCATATTCAGACCCTTTATAGTGCCCCGTTTTGTATAC
GACCCTCATACATATCCCTCGCTCCCCGCCACTATAACCG
NCACGATGAAGTGNGAGGCCTGGNGGNCGCCTGGGTGCAGTAGTGGAGGT
GAACTATAGAATTTTCAAAAAAATTCAATTCCCAACAACCACATAGTGGC
TCATAACCTCTCTAATGAGATCCAGTGCCCTCTTCTGGTATGCAGGCATA
CACGCAGGCAGAACACTGTATAGATAATAAGTAACCCTTTTTTAAAAAAT
CTAGTTATCTTGACAGGATGGAAAATGCCCTGATTTTAGAAGGAGTCTTT
TTTCTTCTTGCTCCACAACAGTTTCTCTTAGGCTCCAGACTTAGGCTTCC
AAATCTCTGGATTTTTTTCTCNTTATTNGCTGGGCTGCTATGACATAGAA
ATATGCCCAGAAATGGCAAAACGGCGTATAATTTGCTTCTCAATCTTGAA
CTGATTAGAATCTCAAATGAAAACTATCTTGTAAGTTTTGAATGGGCCTA
TTATTAAATGCTACAGATATCAGAAAGTGTTATTACTGAATTGAAGAGTC
AGCCCAAGGTGAGAACAGTAATGAATTCCAAGACGTGGGTTGGATCCCTG
GCTGGTCTTCCTTTAGCCAACAAGGAAACTCTGAGCTAGCTAGTTTTTTC
TCATGATGATCCTGAGCCTACATGCTTATTCCCAAAAGAAGATTTTTTTT
TTTCTCACACATGCATAAGCACACTGACGACATGTGGTGTGGTTTACCTG
TTAACTGTATCTGCGAATATTTATATTCTAAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no464_p10.b1 MSMg01no464_p10.b1 CHROMAT_FILE:
MSMg01no464_p10.b1 PHD_FILE: MSMg01no464_p10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:53 2005
         (124 letters)



>mm_chr15_74719558_74720081
          Length = 524

 Score =  230 bits (119), Expect = 2e-65
 Identities = 122/123 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgacttccggctttcactgtcatgtgtacacctattcccgtgtaagcgcacacattagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ttgacttccggctttcactgtcatgtgtacacctattcccgtgtaagcgcacacattagg 264

                                                                       
Query: 61  acctgaaaggatctaatgcttacattgagggctggtccttagcctagagagagttcacga 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 263 acctgaaaggatctaatgcttacactgagggctggtccttagcctagagagagttcacga 204

              
Query: 121 tga 123
           |||
Sbjct: 203 tga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 124
Length of database: 524
Length adjustment: 8
Effective length of query: 116
Effective length of database: 516
Effective search space:    59856
Effective search space used:    59856
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no464_p10.g1 MSMg01no464_p10.g1 CHROMAT_FILE:
MSMg01no464_p10.g1 PHD_FILE: MSMg01no464_p10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:53 2005
         (191 letters)



>mm_chr15_74522968_74523558
          Length = 591

 Score =  362 bits (187), Expect = e-104
 Identities = 190/191 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtataatttgcttctcaatcttgaactgattagaatctcaaatgaaaactatcttgtaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtataatttgcttctcaatcttgaactgattagaatctcaaatgaaaactatcttgtaag 260

                                                                       
Query: 61  ttttgaatgggcctattattaaatgctacagatatcagaaagtgttattactgaattgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttgaatgggcctattattaaatgctacagatatcagaaagtgttattactgaattgaa 320

                                                                       
Query: 121 gagtcagcccaaggtgagaacagtaatgaattccaagacgtgggttggatccctggctgg 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagtcagcccaaggtgaaaacagtaatgaattccaagacgtgggttggatccctggctgg 380

                      
Query: 181 tcttcctttag 191
           |||||||||||
Sbjct: 381 tcttcctttag 391


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 191
Length of database: 591
Length adjustment: 8
Effective length of query: 183
Effective length of database: 583
Effective search space:   106689
Effective search space used:   106689
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)