BAC Information

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BAC

Clone NameMSMg01-464P11
Chromosome15 (Build37)
Map Location 74,523,165 - 74,719,930
singlet/doubletdoublet
Overlap geneJrk, 4933427E11Rik, Psca, 4930572J05Rik, Slurp1, Lypd2, 2300005B03Rik, Lynx1, Ly6d, D730001G18Rik, Ly6k, Gml, Hemt1, Cyp11b1, Cyp11b2, 2010109I03Rik
Upstream geneGpr20, LOC100040946, pPtp4a3, Gm628, LOC100041273, EG625276, LOC100040966, EG666113, LOC100041307, LOC100040984, Bai1, 1700016M24Rik, Arc
Downstream geneLOC625653, Ly6e, Ly6i, LOC666240, LOC100041528, Ly6a, Ly6c, LOC546642, EG625737, LOC100041546, I830127L07Rik, LOC100041070, LOC546644, LOC100041087, BC025446, LOC100041092, Ly6f, LOC100041652, LOC100041107, 9030619P08Rik, Ly6h, Gpihbp1, Zfp41, 2810039B14Rik, Top1mt, Rhpn1, Mafa, Zc3h3, LOC672572, Gsdmdc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-464P11.T7 (MSMg01no464_p11.b1)MSMg01-464P11.TJ (MSMg01no464_p11.g1)
ACCAG549257AG549258
length742740
length of high quality
(start - end)
176 (77 - 252)233 (373 - 605)
definitionCHROMAT_FILE: MSMg01no464_p11.b1 PHD_FILE: MSMg01no464_p11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:53 2005CHROMAT_FILE: MSMg01no464_p11.g1 PHD_FILE: MSMg01no464_p11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,719,757 - 74,719,930)(74,523,165 - 74,523,390)
sequence
NTTCTCAATACXXXXXXXXXXXXXXXXXXXXXXXXATACAATAGAATCCG
CGGAATTCCAGGTTCGCCGAAAACGACACCCTGNCTAAGCAAGGAAAGTG
CAGAATGATTAGGAAGACTCTCCAGGTTGACTTCCGGCTTTCACTGTCAT
GTGTACACCTATTCCCGTGTAAGCGCACACATTAGGACCTGAAAGGATCT
AATGCTTACATTGAGGGCTGGTCCTTAGCCTAGAGAGAGTTCACGATGAA
TAACAAACAAACCCTGAGGAAAAGATGGTTTCCAGAGTCGCCACACTGTT
AGATTCAAATGTTAAATTTTTTTTCCCCAAATCCCAGGTTTTATAAAGAA
ACATATATCCCATTTGAAGGAACAGCAACAAAATCTTCACAGAAACTTTG
CTTGAGAACGGCAAGATGGCAGACACATTAGACACAGACACTCTCTTAAA
AGTGCCCAGAGAGCTGAGGGAAGATGTGGGGAGAACATGAGAAAAGACTA
AAGGAGTCATCCTGACGTGGAGAATGAAGGCTTTGCAAATGGACCGCTGA
TGTCAGTTAAAGGATGCTCCAGTGTAACTCAAGACTCCAGTGACTATATC
AATGACCCTGAACCGTGTATTAAATGTAGCATAACCAGAGAATCCATTTT
TGTCCCCACACTGACCACAGAATCTTTATAGGTCCCTGCTACGACAATTA
TTATTATAATTACCTACCCCGCTTGTTAGTTACATGTGCCTG
NACGATGAAAGNGGTAGGCCTGGAGGNCGCCTGGTTGCCTACGCGGATGT
GACACNANAGAATTTCCANCACCAGGCANNCCCAACAACCACAAAGGGGC
CCAGAACCNCNCNAAGGAGACCCCGCGCCCNCTTCGGGNANGCAGGCANA
CACGCAGGCAGAACACTGTAGAGAGAACAAGNAACCCTTTTTTAAAAAAT
CTAGTTATCTTGACAGGATGGAAAATGCCCTGATTTTAGAAGGAGTCTTT
TTTCTTCTTGCTCCACAACAGTTTCTCTTAGGCTCCAGACTTAGGCTTCC
AAATCTCTGGATTTTTTTTTCTCTATTNGCCGGGCTGCTATGACATAGAA
ATATGCCCATATATGGTCCAACGGTGTATAATTTGCTTCTCAATCTTGAA
CTGATTAGAATCTCAAATGAAAACTATCTTGTAAGTTTTGAATGGGCCTA
TTATTAAATGCTACAGATATCAGAAAGTGTTATTACTGAATTGAAGAGTC
AGCCCAAGGTGAGAACAGTAATGAATTCCAAGACGTGGGTTGGATCCCTG
GCTGGTCTTCCTTTAGTCAACAAGGAAACACTGAGCTAGCTAGTTTTTTC
TCATGATGATCCTGAGTCTACATGCTTATCCCCAAAAGAAGACTATTTTA
TTTCTCACACATGCATAAGCACATTGATGAGATGTGGTGGGGTTTAGCTG
TTAAAAGGAGCCGGTAAAATTTACATTCAGAGGATTGTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no464_p11.b1 MSMg01no464_p11.b1 CHROMAT_FILE:
MSMg01no464_p11.b1 PHD_FILE: MSMg01no464_p11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:53 2005
         (176 letters)



>mm_chr15_74719557_74720132
          Length = 576

 Score =  315 bits (163), Expect = 8e-91
 Identities = 171/174 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caccctgnctaagcaaggaaagtgcagaatgattaggaagactctccaggttgacttccg 60
           ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 374 caccctgtctaagcaaggaaagtgcagaatgattaggaagacactccaggttgacttccg 315

                                                                       
Query: 61  gctttcactgtcatgtgtacacctattcccgtgtaagcgcacacattaggacctgaaagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 gctttcactgtcatgtgtacacctattcccgtgtaagcgcacacattaggacctgaaagg 255

                                                                 
Query: 121 atctaatgcttacattgagggctggtccttagcctagagagagttcacgatgaa 174
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 254 atctaatgcttacactgagggctggtccttagcctagagagagttcacgatgaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 176
Length of database: 576
Length adjustment: 8
Effective length of query: 168
Effective length of database: 568
Effective search space:    95424
Effective search space used:    95424
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no464_p11.g1 MSMg01no464_p11.g1 CHROMAT_FILE:
MSMg01no464_p11.g1 PHD_FILE: MSMg01no464_p11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:53 2005
         (233 letters)



>mm_chr15_74522965_74523597
          Length = 633

 Score =  429 bits (222), Expect = e-125
 Identities = 225/226 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggtgtataatttgcttctcaatcttgaactgattagaatctcaaatgaaaactatcttgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggtgtataatttgcttctcaatcttgaactgattagaatctcaaatgaaaactatcttgt 260

                                                                       
Query: 61  aagttttgaatgggcctattattaaatgctacagatatcagaaagtgttattactgaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagttttgaatgggcctattattaaatgctacagatatcagaaagtgttattactgaatt 320

                                                                       
Query: 121 gaagagtcagcccaaggtgagaacagtaatgaattccaagacgtgggttggatccctggc 180
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaagagtcagcccaaggtgaaaacagtaatgaattccaagacgtgggttggatccctggc 380

                                                         
Query: 181 tggtcttcctttagtcaacaaggaaacactgagctagctagttttt 226
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggtcttcctttagtcaacaaggaaacactgagctagctagttttt 426


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 633
Length adjustment: 9
Effective length of query: 224
Effective length of database: 624
Effective search space:   139776
Effective search space used:   139776
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)