Query= MSMg01no467_h03.b1 MSMg01no467_h03.b1 CHROMAT_FILE:
MSMg01no467_h03.b1 PHD_FILE: MSMg01no467_h03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:19 2005
(491 letters)
>mm_chr15_23412326_23413216
Length = 891
Score = 878 bits (454), Expect = 0.0
Identities = 480/490 (97%), Gaps = 4/490 (0%)
Strand = Plus / Plus
Query: 4 ggaattccttctgttc--ccttgtcactgagttgattttactcttagtccactcccagag 61
||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 204 ggaattccttctg--cagccttgtcactgagttgactttactcttagtccactcccagag 261
Query: 62 aatggacacagctgggcttaacttttagacctgcatttttcttaatgagttataagctgg 121
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aatgcacacagctgggcttaacttttagacctgcatttttcttaatgagttataagctgg 321
Query: 122 ttaagctgtatgggagagaaaatacagtatgcatatacatacaaaaattcttagattatg 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ttaagctgtatgggagagaaaatacagtatgcatatacatacaaaaattcttagattatg 381
Query: 182 ttaactatttctaaaaggaaaatacctatattatgaaagaaactcaagatatttgttaaa 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ttaactatttctaaaaggaaaatacctatattatgaaagaaactcaagatatttgttaaa 441
Query: 242 tatcataaataataaacattacccatcatgattatcatataatttaacaatgcattattg 301
||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||
Sbjct: 442 tatcataaataataaacattacccatcatgaagaacagataatttaacaatgcattattg 501
Query: 302 ttagtatagtgataataaatgcaaagataattttaaaaacacaactattaacataagtta 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ttagtatagtgataataaatgcaaagataattttaaaaacacaactattaacataagtta 561
Query: 362 tttcttcactgacaatgattatacaatgagtgtgttgcaaagaagcacaatttttaactg 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tttcttcactgacaatgattatacaatgagtgtgttgcaaagaagcacaatttttaactg 621
Query: 422 aaaaaaatcataaactaaattgtgccttatgacaactacatttatcactttatagacatg 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 aaaaaaatcataaactaaattgtgccttatgacaactacatttatcactttatagacatg 681
Query: 482 cttttgtatg 491
||||||||||
Sbjct: 682 cttttgtatg 691
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space: 423761
Effective search space used: 423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no467_h03.g1 MSMg01no467_h03.g1 CHROMAT_FILE:
MSMg01no467_h03.g1 PHD_FILE: MSMg01no467_h03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:19 2005
(458 letters)
>mm_chr15_23563004_23563864
Length = 861
Score = 826 bits (427), Expect = 0.0
Identities = 452/461 (98%), Gaps = 3/461 (0%)
Strand = Plus / Minus
Query: 1 actttgtagactaggctggcctcaaactcagaaatctgcctgcctctgcctcccaagtgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 actttgtagactaggctggcctcaaactcagaaatctgcctgcctctgcctcccaagtgc 695
Query: 61 tgggattaaaggtgtacaccaccatgcccggctccctggtatgtttctaatgcatctctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 tgggattaaaggtgtacaccaccatgcccggctccctggtatgtttctaatgcatctctt 635
Query: 121 acaattttcagatagttatcaaagtgtacttgctgagatcatggtcaaaagtgagtgatt 180
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 634 ataattttcagatagttatcaaagtgtacttgctgagatcatggtcaaaagtgagtgctt 575
Query: 181 t-gtttatttgcagaggtaaaacagtccttgtttatattttgatctttaacttactttct 239
| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 ttgtttatttgcagaagtaaaacagtccttgtttatattttgatctttaacttactttct 515
Query: 240 gttatatactcaattaatgtcaatcaatagttttgaagaatattctcctgctttctctca 299
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gttagatattcaattaatgtcaatcaatagttttgaagaatattctcctgctttctctca 455
Query: 300 tatatata--ggcattcaaatttacaacactttcttttacagcttgtctttgacccattg 357
|||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 454 tatatatataggcattcaaatttacaacactttcttttacagcttgtctttgatccattg 395
Query: 358 ttttcatgtcaataattagacttaattctgggttactttttattttatagtccattggtc 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ttttcatgtcaataattagacttaattctgggttactttttattttatagtccattggtc 335
Query: 418 tgtggaaagtcttgctgcttttcttgtcatgactttagagt 458
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtggaaagtcttgctgcttttcttgtcatgactttagagt 294
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 861
Length adjustment: 10
Effective length of query: 448
Effective length of database: 851
Effective search space: 381248
Effective search space used: 381248
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
