Query= MSMg01no467_j12.b1 MSMg01no467_j12.b1 CHROMAT_FILE:
MSMg01no467_j12.b1 PHD_FILE: MSMg01no467_j12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:31 2005
(243 letters)
>mm_chr15_83355406_83356047
Length = 642
Score = 381 bits (197), Expect = e-110
Identities = 232/249 (93%), Gaps = 10/249 (4%)
Strand = Plus / Minus
Query: 1 ttatttgttcgtttactttttcaagacagggcttctctgtgtagccctggcttttctgga 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 ttatttgttcgtttgctttttcaagacagggcttctctgtgtagccctggcttttctgga 512
Query: 61 actcacagagatgtgccagccccagcctccctagtgctgggattaacatcatgcacc--- 117
||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||
Sbjct: 511 actcacagagatgtgccagccccagcctccctagtgctgggtttaaaagcatgcaccaac 452
Query: 118 ------taccaccaggctgagaatccatgtctcaaattacaaagaaaaactgggtgtgtt 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 cactactaccaccaggctgagaatccatgtctcaaattacaaagaaaaactgggtgtgtt 392
Query: 172 gattctccctgtcatctcaggtttggaaagttgaagccaggaggccaaggcgttcaaggc 231
||| | |||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 391 gatac-ccctgtcatctcaggtttgggaagttgaagccgggaggccaaggcgttcaaggc 333
Query: 232 tacatacac 240
|||||||||
Sbjct: 332 tacatacac 324
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 642
Length adjustment: 9
Effective length of query: 234
Effective length of database: 633
Effective search space: 148122
Effective search space used: 148122
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no467_j12.g1 MSMg01no467_j12.g1 CHROMAT_FILE:
MSMg01no467_j12.g1 PHD_FILE: MSMg01no467_j12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:31 2005
(377 letters)
>mm_chr15_83175855_83176631
Length = 777
Score = 690 bits (357), Expect = 0.0
Identities = 372/377 (98%)
Strand = Plus / Plus
Query: 1 agttcgtagaaggggaaaagcaacagcttttagctgacagcgtttagcccgataatgaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agttcgtagaaggggaaaagcaacagcttttagctgacagcgtttagcccgataatgaga 260
Query: 61 actttcttacggaaatggcagctaacacttcacaaagccttcacaaaaacctgaaggaaa 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 actttcttacggaaatggcagctaacactacacaaagccttcacaaaaacctgaaggaaa 320
Query: 121 gggtttatcacctcagcagcctcagtgactgtgacacctgggaaatctctcggaatggaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggtttatcacctcagcagcctcagtgactgtgacacctgggaaatctctcggaatggaa 380
Query: 181 tggtggggcatgcctgggcagtggagttaaggggatcaggagttcaaggttgtctttagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggtggggcatgcctgggcagtggagttaaggggatcaggagttcaaggttgtctttagc 440
Query: 241 tactctgagcatgggaggccagcctgggatacctgaaaccttatttcagaacagaacgaa 300
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tacacagagcatgggaggccagcctgggatacctgaaaccttatttcagaacagaacgaa 500
Query: 301 aatgagaaacgtaggaagcagatgtctccccccgtgttagcatagcatcacaaagttctt 360
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 501 aatgagaaacgtaggaagcagatgtctccccccgtgttagcacagtatcacaaagttctt 560
Query: 361 catctacttttaaaaat 377
|||||||||||||||||
Sbjct: 561 catctacttttaaaaat 577
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 777
Length adjustment: 9
Effective length of query: 368
Effective length of database: 768
Effective search space: 282624
Effective search space used: 282624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
