BAC Information

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BAC

Clone NameMSMg01-468H02
Chromosome15 (Build37)
Map Location 4,177,285 - 4,177,745
singlet/doubletsinglet
Overlap genenone
Upstream geneSepp1, LOC100039139, Ghr, LOC223278, Fbxo4, AW549877, LOC100039196, Oxct1
Downstream genePlcxd3, C6, LOC100039214, 4930455B06Rik, C7, Card6, Rpl37, LOC100039281, Prkaa1, Ttc33
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-468H02.T7 (MSMg01no468_h02.b1)MSMg01-468H02.TJ (MSMg01no468_h02.g1)
ACCAG551913AG551914
length777775
length of high quality
(start - end)
576 (44 - 619)461 (71 - 531)
definitionCHROMAT_FILE: MSMg01no468_h02.b1 PHD_FILE: MSMg01no468_h02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:40 2005CHROMAT_FILE: MSMg01no468_h02.g1 PHD_FILE: MSMg01no468_h02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCAACTAAGTTCTCCCAAATGGCTGAGAAGCACCTGAAAAAATGTTCA
ATGTCCTTAATCATCAGGGAAATGCAAATCAAAGCAACCCTGAGATTCTA
CCTCACACCAGTCAGAATGGCTAAGATCAAAATTTCAGGTGACAACAGAT
GCTGGCGAGGATGTGGAGAAAGAGGGACACTCCTCCATTGTTGGTGGGAT
TGCAAGCTGGTACAACCACTCTGGAAATCAGCCTGGTGATTCCTCAGAAA
ATTGGACATAGTACTACTAGAAGATTCAGCAATACCTCTCCTGGGCATAT
ACCCAGTAAATGTTCCAACTTATAATAAGGACACATGCTCCACTATTTTC
ATAGCAGCCTTATTCATAATATCTAGAAGCTGGAAAGAACCCAGATTTCC
TTCAACAGAGGAATGGATACAGAAAATGTGGTACATTATACAATGGAGTA
CTACTCAGCAACTAAAACCAATAAATTTATGAAATTCTTAGGCAAATGGA
TGCATCTGGAGGATATCATCCTGAGTGAGGTAACTCAATCACAAAAGTAC
ACACATGTTATGCACTCACTGGTAAGTGGATATTAACCTAGAAACTTAAA
CTACCCAGGATGCAATTTGTATAGCACATGAAACTCTAGAAGAAGGAAAG
GCAAAGTGTGGATACTTCATTCTTTCTTAAAATGGGGAACAAATAACCAT
GGAGGGAACCACGAAAACAAGTTTAGA
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATATACTGTTAAGCCATTAAGGTTTTCAGT
AGCTTGCCGTCGTTGCAGATCTAGAAAACTTAAACCAAGGGTCAGCGCCT
CTGTGACATTGCCTGTGACAGTGGTAAGTTCCTCCTAGCCACAGCATCTG
ACTAACTGTATGTAGAAAGGCTTCCTCAGATTCACTAACAACAGCTCATT
TGTCAGTAATGCAAGATCCAGAGCAGATAGTCAATGCATGAGAGAGATGA
AGTTAGTCAAGTGGAGTTTTTATTATGTACTGTCTCGATTTTAGAAATTT
CACATATGTGGAGAAATAGCATATGGAAACATTCAAATGTAAATTGAGTG
TCAACTTGTCAGAGGATAACTGGCTCCCAGAGGGATTTGATATGTACTTT
AAAAATAAATGCAGGTTATACCAGATTGCCCAAGTACTAAGTATTGGGAA
AAATGTAATCATAGGTGTGTTGCTTTTGCCACCCAAAGTGATACAGCATA
AAGTTCATAGCACCAGAGGCTCCCATGAGATGTTATTGATAGCCAGGTGC
AAAGATGTCAGTTGGGTTTCTTGACTTCAGCCTTGCTAACTAATGGTTGA
CCTATCCTGCTTTTTATGTTATTTAAAGCGGTATAATCCCAAATTTTGTT
TTGTTCTCCCTCCTTTTCAATGAGACTGCTCCCCCCTCCACTCTATCTTC
AGCGTTGCACATTTCTTGTTGATCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no468_h02.g1 MSMg01no468_h02.g1 CHROMAT_FILE:
MSMg01no468_h02.g1 PHD_FILE: MSMg01no468_h02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:44:40 2005
         (461 letters)



>mm_chr15_4177085_4177945
          Length = 861

 Score =  830 bits (429), Expect = 0.0
 Identities = 453/461 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atatactgttaagccattaaggttttcagtagcttgccgtcgttgcagatctagaaaact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 atatactgttaagccattaaggttttcagtagcttgccgtcgttgcagatctagaaaact 602

                                                                       
Query: 61  taaaccaagggtcagcgcctctgtgacattgcctgtgacagtggtaagttcctcctagcc 120
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 601 taaaccaagggtcagcgcctctgtgacattgcccgtgacagtggtaagttcctcctagcc 542

                                                                       
Query: 121 acagcatctgactaactgtatgtagaaaggcttcctcagattcactaacaacagctcatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 acagcatctgactaactgtatgtagaaaggcttcctcagattcactaacaacagctcatt 482

                                                                       
Query: 181 tgtcagtaatgcaagatccagagcagatagtcaatgcatgagagagatgaagttagtcaa 240
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tgtcagtagtgcaagatccagagcagatagtcaatgcatgagagagatgaagttagtcaa 422

                                                                       
Query: 241 gtggagtttttattatgtactgtctcgattttagaaatttcacatatgtggagaaatagc 300
           ||||||   | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gtggagaactcattatgtactgtctcgattttagaaatttcacatatgtggagaaatagc 362

                                                                       
Query: 301 atatggaaacattcaaatgtaaattgagtgtcaacttgtcagaggataactggctcccag 360
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 atatggaaagattcaaatgtaaattgagtgtcaacttgtcagaggataactggctcccag 302

                                                                       
Query: 361 agggatttgatatgtactttaaaaataaatgcaggttataccagattgcccaagtactaa 420
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 301 agggatttgatatgtactttaaaaataaatgcaggttatagcagattgcccaagtactaa 242

                                                    
Query: 421 gtattgggaaaaatgtaatcataggtgtgttgcttttgcca 461
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gtattgggaaaaatgtaatcataggtgtgttgcttttgcca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space:   383801
Effective search space used:   383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)