BAC Information

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BAC

Clone NameMSMg01-469A22
Chromosome15 (Build37)
Map Location 92,275,941 - 92,276,552
singlet/doubletsinglet
Overlap genePdzrn4
Upstream geneSlc2a13, Lrrk2, Muc19, Smgc, LOC100042529, Cntn1
Downstream geneLOC100042552, LOC100043283, Glt8d3, Yaf2, Zcrb1, Pphln1, LOC627623
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-469A22.T7 (MSMg01no469_a22.b1)MSMg01-469A22.TJ (MSMg01no469_a22.g1)
ACCAG552384AG552385
length7821,309
length of high quality
(start - end)		620 (39 - 658)---
definitionCHROMAT_FILE: MSMg01no469_a22.b1 PHD_FILE: MSMg01no469_a22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:30 2005CHROMAT_FILE: MSMg01no469_a22.g1 PHD_FILE: MSMg01no469_a22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATT
CTCCTAGTCTACTCTAACTCCCACGTCTCTCCGAGGTCTTCTTCTATCTC
CACACAAACCTATCACTTCCTCTGTCCCAAGTATGTTACTTTTTTTTTTC
TAATAAAATCTCCTTTATAGGTAGCACTGGGATCTTTAATCTAACAGCAA
AGCTTACTCCTAGCCTCTCGTTTCTTGAATGCATTCAATCTCATCTCCTT
CACTTACTATGTGTCTGTGGGCTTATATACAATTATCCCTCAAATTTCAT
TATTAAGATCTCTATACCACATTTTGGGGAGAGACACATAACACCAGGAA
TGCAGTCAGTAGAGATGTCAGCACAGATTGTGGGTAGAGATGTGTGTCGG
AAGGAATGTACCTCCTGTCTCTCTGATGGTCACTCCTTCATCCCTGTCAA
GCTTTTGACAAAGATCTGGCCATACATCCATTTTGTATGGAAGATCAGAG
CATTTAAAGTTTTGGCAATGAGAAGTAATAATGTTGGGATTTATATTCTA
GTAAAATATTTCAGGCAAAGGGGTGAATATAGAACAGGTGATAAGTACTA
TGAAGGAAACTAAGACAGCCATGATGCAGGAGAATGATAATTTGTATCAG
GGGCAAACCGTGTAAAATGTGTGTTCTTAAATCAAGACAGGCTATGTAGA
GACATGTACTACATGGTGTTTTGGGTGGCTGTCTTCAAGCACATACACCT
TTTCTTTCCTGAGGCATTTTGATCCTGTGAGT

CGAACTTCCGGCGGTTTGGGTNGGGGCGCGAGATGCGGAGTGCTTCTCAT
TATCGTCGTGTAACAACGCGACCGTACCAAAAGTTTTTTTCGGTTAATGC
CCACGGCGCCTTTGCTCCCCGGTTTATGTCCGGCGACGTGTTCGCGGGCT
TTTAACGGCACATCCTTGCCCCCGTGTGTATATCTATACTTCGGTAGCGC
TACAGTATAGCAAACACCCGTCTCCTTTCTCCGTACACCCGCACACTTTC
TATGCTACCACTTACCCGCATATTCCAGGACCGCTGTGTGCGTGCCACTT
TGTTAGATGGGCGGGGCCTAAAGAGTCGAAAATCGCAAACGACGTAGTTC
GACTCCACGGCGAAGACACGGAATACAGTAAGTAACGCATAGACGGGGAG
TACTTGCACGTTGGTCATGCAGACTAATTGTTAATCATCTCATGTTGTTG
TGACCCCCTTTCTTTATACATATATTAACGCCTATATATATTCCCTCTCT
ATCGTTTTATTCAGAGCATCAGCCATGGGTACGGGACTAGATGAGAGAGG
GCGCAGGGCTGATAACAATTGGACGGCGAAGTAAGCAAAGCAACGCGGGA
GTCGCGGAAATACCCAACTTATAGCACAGTAATAGGCGGGTATGGAGAGA
GGAGGCGAAAAAGTATTAGCGACGATCGCCGAGGTTCGGTGAACAACGGG
TATCGCACAGGAATGAAGATGAGGAGTGTAGCGGCGGCGCACACATTGTG
TGGTTCAACGCGCGTAATATCGACGGTACAGAAAATTAAGAGTATAACGA
TGAAACGGTCTCGGTTATATGAAGAGTGACAGTGAGCGCTCGGCTTGTCG
GTCTTGTTTTTCGCCCACGTATATATACGATATCCAGTAGCCCCGCAATG
CTGCATATATCCGGCTCGCGATATCGTAATTACGCAGCAGAAAATGCATG
CCGGTTGCATTTATATATGAGGCGTAGCGCTAGACTGTTTTGCGTACAAT
CCAACCCTCACTTGCTATGCCTATTGTGTCAACCGCAATATTCACCGCAG
ATCTTCACGCCTTATCTTTATCGCGCCGCCGACGCTGTTTACACATATTT
TGATATTCACGCGCTATCGATTCCTGTATCCCGGTTATTATACCTTATAT
ACCACGCGTCCGTACAGCTTTACAGATGTATGCGCCGCGTAAGGAGAGAT
ACTTATATAGACCATGCTCACCGCACACGTCTTGAATATCGCCAAGAGAG
TATATGATGATCGACGCACGCGATATATCTAGTATAGACCGCCGCAATAC
GCGCTATAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no469_a22.b1 MSMg01no469_a22.b1 CHROMAT_FILE:
MSMg01no469_a22.b1 PHD_FILE: MSMg01no469_a22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:45:30 2005
         (620 letters)



>mm_chr15_92275734_92276752
          Length = 1019

 Score = 1077 bits (557), Expect = 0.0
 Identities = 599/613 (97%), Gaps = 1/613 (0%)
 Strand = Plus / Minus

                                                                       
Query: 8   gaattctcctagtctactctaactcccacgtctctccgaggtcttcttctatctccacac 67
           |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 819 gaattctcctagtctagtctaactcccacgtctctccgaggtcttcttcaatctccacac 760

                                                                       
Query: 68  aaacctatcacttcctctgtcccaagtatgttacttttttttttctaataaaatctcctt 127
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 759 aaacctatcacttcctctgtcccaagtatgttac-tttttttttctaataaaatctcctt 701

                                                                       
Query: 128 tataggtagcactgggatctttaatctaacagcaaagcttactcctagcctctcgtttct 187
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 tataggtagcactgagatctttaatctaacagcaaagcttactcctagcctctcgtttct 641

                                                                       
Query: 188 tgaatgcattcaatctcatctccttcacttactatgtgtctgtgggcttatatacaatta 247
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 640 tgaatgcattcaatctcatctccttcacttactacgtgtctgtgggcttatatacaatta 581

                                                                       
Query: 248 tccctcaaatttcattattaagatctctataccacattttggggagagacacataacacc 307
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 580 tccctcaaatttcattattaagatctctataccacattttggggagagacacataacatc 521

                                                                       
Query: 308 aggaatgcagtcagtagagatgtcagcacagattgtgggtagagatgtgtgtcggaagga 367
           || ||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||
Sbjct: 520 agaaatgcagtcagtagagatgtcagcacagagtgtggatagggatgtgtgtcggaagga 461

                                                                       
Query: 368 atgtacctcctgtctctctgatggtcactccttcatccctgtcaagcttttgacaaagat 427
           |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 460 atgtaccttctgtctctctgatggtcactccttcatccatgtcaagcttttgacaaagat 401

                                                                       
Query: 428 ctggccatacatccattttgtatggaagatcagagcatttaaagttttggcaatgagaag 487
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 400 ctggccatacatccattttgtatggaagagcagagcatttaaagttttggcaatgagaag 341

                                                                       
Query: 488 taataatgttgggatttatattctagtaaaatatttcaggcaaaggggtgaatatagaac 547
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 taataatgttgggatttatattctagtaaaatatttcaggcaaaggggtgaatatagaac 281

                                                                       
Query: 548 aggtgataagtactatgaaggaaactaagacagccatgatgcaggagaatgataatttgt 607
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 aggtgataagtattatgaaggaaactaagacagccatgatgcaggagaatgataatttgt 221

                        
Query: 608 atcaggggcaaac 620
           |||||||||||||
Sbjct: 220 atcaggggcaaac 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1019
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1009
Effective search space:   615490
Effective search space used:   615490
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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