Query= MSMg01no469_h13.b1 MSMg01no469_h13.b1 CHROMAT_FILE:
MSMg01no469_h13.b1 PHD_FILE: MSMg01no469_h13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:04 2005
(243 letters)
>mm_chr15_61598024_61598666
Length = 643
Score = 462 bits (239), Expect = e-135
Identities = 242/243 (99%)
Strand = Plus / Plus
Query: 1 tggctgttcccttctgatcccaaatgttgaagggaagccctctattgaaccccccaagtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggctgttcccttctgatcccaaatgttgaagggaagccctctattgaaccccccaagtt 260
Query: 61 ctgtctcagccctcaggctcccactgttcagactcccaaacacaaaacctaatagttgga 120
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 261 ctgtctcagccctcaggctcccactgttcagactcccaaatacaaaacctaatagttgga 320
Query: 121 attgtgccagtcaaggagggaggggaggaattttctgcagtggctgcaggaactttccaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attgtgccagtcaaggagggaggggaggaattttctgcagtggctgcaggaactttccaa 380
Query: 181 gagctattcctgtaaccgagagtgttgacatcaggctgtcaaagagagaacagggaaggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagctattcctgtaaccgagagtgttgacatcaggctgtcaaagagagaacagggaaggg 440
Query: 241 ctc 243
|||
Sbjct: 441 ctc 443
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space: 148356
Effective search space used: 148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no469_h13.g1 MSMg01no469_h13.g1 CHROMAT_FILE:
MSMg01no469_h13.g1 PHD_FILE: MSMg01no469_h13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:04 2005
(440 letters)
>mm_chr15_61800561_61801401
Length = 841
Score = 795 bits (411), Expect = 0.0
Identities = 434/442 (98%), Gaps = 2/442 (0%)
Strand = Plus / Minus
Query: 1 tcttgagaaaatcctggagaattcttgagaaaataactcctgaaatgcttgcagtgtttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 tcttgagaaaatcctggagaattcttgagaaaataactcctgaaatgcttgcagtgtttg 418
Query: 61 ttacagagtaagtgttccataaacgctagttcctagtacttacatgcttccatgtttgtt 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 417 ttacagagtaagtgttccataaatgctagttcctagtacttacatgcttccatgtttgtt 358
Query: 121 tcagtagctgtttccttagtcccatctctaccctattaggtcagtagacatatctttact 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 tcagtagctgtttccttagtcccatctctaccctattaggtcagtagacatatctttaca 298
Query: 181 tgaccagtgaaagggatagaataaaatgtagaggcagcgtttttagatgcaaaccttttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 tgaccagtgaaagggatagaataaaatgtagaggcagcgtttttagatgcaaaccttttt 238
Query: 241 gccat-tattgnttttatcgacaaagaaccctagagaagccaggtgtggtggggcaaaga 299
||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 gccatcaaatgtttttatcgacaaagaaccctagagaagccaggtgtggtggggcaaaga 178
Query: 300 ggcagaagtaggtggatttctgtgagtctatgccaacttggcatatagtgagacccattc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 ggcagaagtaggtggatttctgtgagtctatgccaacttggcatatagtgagacccattc 118
Query: 360 tt-aaaaaaaaaagtcccttgtgagatgggatagtgaagctatgtggcttatctgaatca 418
|| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 117 ttaaaaaaaaaaagtcccttgtgagatgtgatagtgaagctatgtggcttatctgaatca 58
Query: 419 gtttaggagaaaggtatccact 440
||||||||||||||||||||||
Sbjct: 57 gtttaggagaaaggtatccact 36
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 841
Length adjustment: 9
Effective length of query: 431
Effective length of database: 832
Effective search space: 358592
Effective search space used: 358592
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
