Query= MSMg01no469_i11.b1 MSMg01no469_i11.b1 CHROMAT_FILE:
MSMg01no469_i11.b1 PHD_FILE: MSMg01no469_i11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:09 2005
(319 letters)
>mm_chr15_86759079_86759797
Length = 719
Score = 437 bits (226), Expect = e-127
Identities = 274/316 (86%), Gaps = 40/316 (12%)
Strand = Plus / Minus
Query: 1 aaggatgtggttcattttctgtgaggagtacaatttacttacatgtatggagctctcttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 aaggatgtggttcattttctgtgaggagtacaatttacttacatgtatggagctctcttc 358
Query: 61 ttatctttttcttgtattaaacagaaaaactagtccttgtttccgaggtgataatggctt 120
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 357 ttatctttttcttgtattaaacagaaaaacaagtccttgtttccgaggtgataatggctt 298
Query: 121 ctttctccgctgcctttgccagccctgcactaattgagctgatctcagagaactagcccg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 ctttctccgctgcctttgccagccctgcactaattgagctgatctcagagaactagcccg 238
Query: 181 gcgtctggatacttttctgttactgtttccatcttacggactatctggatacttttctgt 240
|||||||||||||||||||||| ||||||||||||||
Sbjct: 237 gcgtctggatacttttctgttattgtttccatcttac----------------------- 201
Query: 241 tattgtctccatcttacccacctctgctctcaccctgtcatctttcttactttccctgtg 300
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 -----------------ccacctctgctctcaccctgtcatctttcttactttccctgtg 158
Query: 301 tttagtctgctcctca 316
||||||||||||||||
Sbjct: 157 tttagtctgctcctca 142
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space: 220100
Effective search space used: 220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no469_i11.g1 MSMg01no469_i11.g1 CHROMAT_FILE:
MSMg01no469_i11.g1 PHD_FILE: MSMg01no469_i11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:09 2005
(425 letters)
>mm_chr15_86569516_86570340
Length = 825
Score = 729 bits (377), Expect = 0.0
Identities = 411/423 (97%), Gaps = 2/423 (0%)
Strand = Plus / Plus
Query: 5 actgccaagaggactgcatcagaacaaatgcttgaaaatgcaaagtcacttgagaaaatt 64
|||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||
Sbjct: 203 actgccaagaggactgcatcagaacaaatgtttgaaaatgcaaagtcacctgagaagatt 262
Query: 65 gcatgtttttgtttatttgtttgtttgagacaggagctcatgtagcttgaacttgctatg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gcatgtttttgtttatttgtttgtttgagacaggagctcatgtagcttgaacttgctatg 322
Query: 125 aatctacgaaggatgaccttgaactccagttcgagaagggtgatctttttaccccagtgt 184
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aagctacgaaggatgaccttgaactccagttcgagaagggtgatctttttaccccagtgt 382
Query: 185 ttggcttgcaggtgagcaccaccatacctggctgtc--tactcaaccatagttgtgtatg 242
|||||||||||||||||||||||||||||||||||| ||||||| ||||||||| | ||
Sbjct: 383 ttggcttgcaggtgagcaccaccatacctggctgtcaatactcaaacatagttgtatgtg 442
Query: 243 atatacgttttcagttggataaatttccagatgtcttaaagcttagtgagtgaggttccg 302
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 aaacacgttttcagttggataaatttccagatgtcttaaagcttagtgagtgaggttccg 502
Query: 303 aacctgtgtaccagggacactcttaaaacctagagcaataagtgagaagagaggaagaag 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 aacctgtgtaccagggacactcttaaaacctagagcaataagtgagaagagaggaagaag 562
Query: 363 gctgaaatgagatgggccagccgcagacccaggccaggggagagagataggataattatg 422
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gctgaaatgacatgggccagccgcagacccaggccaggggagagagataggataattatg 622
Query: 423 gca 425
|||
Sbjct: 623 gca 625
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 825
Length adjustment: 9
Effective length of query: 416
Effective length of database: 816
Effective search space: 339456
Effective search space used: 339456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
