BAC Information

Click to search

BAC

Clone NameMSMg01-469J19
Chromosome15 (Build37)
Map Location 16,423,503 - 16,423,904
singlet/doubletsinglet
Overlap genenone
Upstream geneEG239341, LOC100040087, LOC624183
Downstream geneLOC100040119, Cdh9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-469J19.T7 (MSMg01no469_j19.b1)MSMg01-469J19.TJ (MSMg01no469_j19.g1)
ACCAG552807AG552808
length789969
length of high quality
(start - end)
531 (44 - 574)---
definitionCHROMAT_FILE: MSMg01no469_j19.b1 PHD_FILE: MSMg01no469_j19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:15 2005CHROMAT_FILE: MSMg01no469_j19.g1 PHD_FILE: MSMg01no469_j19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTATTTTTCTGATCAAATAATTCCTCCGAAATTTCAAAGGTTATCTT
CTTGAATATTATTATTTCCAAAAAGATAAGACAACTATATTAATTGATAG
TGTGAATTTAATCTGAAGCTTTTCTTCATCTCAAGGATCCAAACTTTGTC
ATTTCTTTTAAATGAGCACATTCATTGACAAATAAGTAATTCCCCTGTTG
CGCTCACCTCATCTGGCAAGGAAAAAAGCAACAGGGTCAAATTCTTCTCA
ACAGCTTTATTCCAGGAAAGCCTTGATGCTACAGGAACCCCGGGAACACA
GGGAGGACTGCTTATATACACCCCAGCACTGGGGAGAGCTATGTGTCCTC
CTGGGATTGGTCAGTCTGCTGGCACTTTAATTTGCATGCACCCACTCGGG
AGAGGTTGGCGCCAGATTCGGGCTAGCACCTGCGCAGTGGCATTGTTTAC
AGCAAAGGTGTACTGGAGACCGGCGCCATATCTTAGGTGCCGGCTACCTA
CATTCCCCTGTGCTCTTTCACTTCAAAAAGGTCAATATTCCCAGTTTCTA
ATACTTTCCTCTAGCCAGTATCAATCAATTATGATAAATTAACACTGAAG
ATGAAGTGAAGGGGATGATGTATGGAGAAAACTGAAATATAAAGGGTGAT
GGCACATGAAAAATTACAATCTCCACTATGGAAGTCCTTTCTTATTGAAA
TTTTACCAACTTTTAATATCATCGGACCCCCAAACTTTT
GTTCCTTGCGTCGTCTTGTTTGGCTGCCTGTTTCCCCTACTTTTACGGTG
ACCCTATTAGATTTATCTCGCCGGAATTCACGTAAGATTGTTGGTCCCAT
TCAGGGATCTTTCAGAATTGCTTTCTATTTCTTGTTAAGACAGAGATGTG
AGTCGACAGATAATCAGGCTATTACTGATCTTACTACTCATGAGCTCAGA
AACCTCTAGGATACTGCTTTACCCACGTTAACGCTTAGAAATTCTCCTTT
CTAGTCTTTGTCTTACGCAGACTACTCTTACCCCATCTAGTACGAATGCT
GTCTCCCCCCCTAATCTCCCACCCCTCTTTTTCACCTTATAAATATTACC
CCCTAGCTGCTCTTTTTTTCCTATCGCCCTCATCCATCGGCTTTACCGCC
AAAACATCTAGTTCGCCGCTTTTCTACTGCCTTTGTCTTTACTTCCAGAC
GATTTTCTTATTTAAGACGTTATATCTCCCCATTGTCTATATATTATGGA
CTCTGGTCCGCGTATTCCTTTTATGCCCTTATTTCTCTGTCACCTAACTG
TCATTCCCGCGCCATTCTTTAAATGCCTCCCCTCGCTACCTTTCTATCTC
ATACTTTGCCCCGGACCTTTTTCCTTGTATCTCTAATGTCATCGTTCCCC
TTTCCCCCCTCCGCCCACTTATACCCCTTAATTGCGATCTTTGCTTCCTC
CCCTCTCTTTCTTTAAACTTCCCTGTCCCCGCCCTCATTCCCGCTTTTAA
CTCCCTTTTTTTTCCTCCCCCCTTCTATTTCTCCGCATATTTCCCGCACT
TTCGCCCTTATTCCCGCGCGCTTCCTTTTTTTCCCTTCTCCCCCTTCTCT
TCCGCCTCGTCTATACTTTCCTTATCTCCCCCTCTTGCCTACCGCTTTCT
TTTATTGTATTTACCCGTTTACATCCCCTTTTCCCCCGCACATATTCTAT
ATCTCCCTCTTATTATCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no469_j19.b1 MSMg01no469_j19.b1 CHROMAT_FILE:
MSMg01no469_j19.b1 PHD_FILE: MSMg01no469_j19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:15 2005
         (531 letters)



>mm_chr15_16423503_16424433
          Length = 931

 Score =  723 bits (374), Expect = 0.0
 Identities = 395/402 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttatttttctgatcaaataattcctccgaaatttcaaaggttatcttcttgaat 64
           ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct: 402 gaattcttatttttctgatcaaataattcgtccgaaatttcaaaggttgtcttcttgaat 343

                                                                       
Query: 65  attattatttccaaaaagataagacaactatattaattgatagtgtgaatttaatctgaa 124
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 342 attattatttccaaaaagataagacaactatattaattgatagtgtgaatttaacctgaa 283

                                                                       
Query: 125 gcttttcttcatctcaaggatccaaactttgtcatttcttttaaatgagcacattcattg 184
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 gcttttcttcttctcaaggatccaaactttgtcatttcttttaaatgagcacattcattg 223

                                                                       
Query: 185 acaaataagtaattcccctgttgcgctcacctcatctggcaaggaaaaaagcaacagggt 244
           |||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||
Sbjct: 222 acaaataagtaattcccctgttgcgctcacttcgtctggcaaggaaaaacgcaacagggt 163

                                                                       
Query: 245 caaattcttctcaacagctttattccaggaaagccttgatgctacaggaaccccgggaac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 caaattcttctcaacagctttattccaggaaagccttgatgctacaggaaccccgggaac 103

                                                                       
Query: 305 acagggaggactgcttatatacaccccagcactggggagagctatgtgtcctcctgggat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 acagggaggactgcttatatacaccccagcactggggagagctatgtgtcctcctgggat 43

                                                     
Query: 365 tggtcagtctgctggcactttaatttgcatgcacccactcgg 406
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42  tggtcagtctgctggcactttaatttgcatgcacccactcgg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space:   479841
Effective search space used:   479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)