BAC Information

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BAC

Clone NameMSMg01-472A10
Chromosome15 (Build37)
Map Location 57,887,067 - 57,887,591
singlet/doubletsinglet
Overlap geneZhx1
Upstream geneBC026439, Zhx2, Derl1, Wdr67, BC030396, 9130401M01Rik
Downstream geneAtad2, LOC665244, 2410187C16Rik, Fbxo32, 8230402K04Rik, Anxa13, LOC100040231, D15Ertd621e, EG631797, Tmem65, EG546638, Trmt12, Rnf139, Tatdn1, Ndufb9, Mtss1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-472A10.T7 (MSMg01no472_a10.b1)MSMg01-472A10.TJ (MSMg01no472_a10.g1)
ACCAG554656AG554657
length748792
length of high quality
(start - end)
561 (52 - 612)117 (78 - 194)
definitionCHROMAT_FILE: MSMg01no472_a10.b1 PHD_FILE: MSMg01no472_a10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:49:30 2005CHROMAT_FILE: MSMg01no472_a10.g1 PHD_FILE: MSMg01no472_a10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:49:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAGCTATTGCTGACTGTAGTGATCTGTTCTGACCCAGTTC
GATTCAGTGGAACTACTTCCCTATTCCTATCCATTCAGGTTAATTGACAG
TTAGATACTACCTGCTTCAGTACTGACTTGTTGTTTGCACTGTCAATCAA
ACATGAACGAGAGGTCAGCCAGGAAGCTCAGCTGGGAAAGTGTTAGACTG
AAGATACTGAGGTCCTTTGCTTTGTCATGAGTTTTGGAGACTGCTTTATC
ATAATAAAGTTGTTACTGGAATGTTTTTGGGGGGCAAACAGGACAACAGT
ACGGGTATGCAAGTGTAGGTAGGGATCAGGAATAGAAATGTTGTTAGCAG
TGATCTGCTACAATACCGTAGGCACTAGATTAGAAAATAAGTAGGAGAGG
TGACTTATAATGCAGAAAGATATTTTATCAACTGTACAAATGACCTGGAA
TCAAGAGCAGCCTGAGATAAACTTTATAAGTGTATCAAGTATCCCTGAAA
TGACAGGATATAGGAAGGAGGAGGAGGAAGACACCAAGAGATGAAGTAGA
ANAGTGAGGTTGGGGCCAGAGAGTGAAGGGAACTGCATATGTCCTACAGA
GCTTCAACTCTATTCTTTCAGCATTTGAGCCCCGACAGCCGAAAAGGAAG
AAGATTATTTGATGGGTTGAACTTTGTATACTTGTCACTGGCCCTGGT
NCCCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGCTCCCCTCTAAGCTACACT
GGAAAATTAGTTCCCAGCTCACTCAGAAAAAAGCTCAGTGATCGATTAGT
AATGTCTGCCAGGGGTACAGGGACGGGGGTGGGGGGGTGATGAGTNNNNN
NNNNNNNNNNNNNNNTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTT
TTTTTNNTNNNNTTTTNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTNNTN
NNTNNNNNNNNTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNTTTTTTTCCCCCCCCCTCCCTTTATCCCTTTTTTTCTTCCCT
TCCCCTTTCTTTCCTCTCCCTTTTTCTTTTTTTTTTTCCTTTTCCTTTTC
CTTCTTTTTTCTTCTTTTTCTTTTTTCTTTTCTTTTTCTTTCCGTTCTCT
TTTTTTCTTTTTCCTTCCTCTTCTTTTTTTTCTTTCCTTCCTCTTCTCTT
TTTCTCCCTCTTTTTTTTTTCTTCACTCTCCTTCTTTTTTTTCTTATCCT
TTTTTTTCTTTTTTTTTCTCTTTCTTCCCCCCTTTCTCTTTTCTTCTTTT
CTTTTCCCCCCTTTTCTCCATTTTCTTTTTTTTTTTTTTTTTTTCTTTCC
TCCTTTTTTTATTTTCTACCCTTTTTTTTTTTATTTTCCCTCCTTTTCTT
TCTATTTTTTTTTACCTTACCCTTTTCTATTTCTTTTTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no472_a10.b1 MSMg01no472_a10.b1 CHROMAT_FILE:
MSMg01no472_a10.b1 PHD_FILE: MSMg01no472_a10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:30 2005
         (561 letters)



>mm_chr15_57886631_57887591
          Length = 961

 Score =  963 bits (498), Expect = 0.0
 Identities = 518/525 (98%)
 Strand = Plus / Minus

                                                                       
Query: 37  tctgacccagttcgattcagtggaactacttccctattcctatccattcaggttaattga 96
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 tctgacccagttcgattcagtggaactacttccctattcctatccattcaggttaattga 902

                                                                       
Query: 97  cagttagatactacctgcttcagtactgacttgttgtttgcactgtcaatcaaacatgaa 156
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 cagttagatactacctgcttcagtactgacttgttgtttgcactgtcaatcaaacatgaa 842

                                                                       
Query: 157 cgagaggtcagccaggaagctcagctgggaaagtgttagactgaagatactgaggtcctt 216
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 cgagaggtcagccaggaagctcagctgggaaagtgttagactgaagatactgaggtcctt 782

                                                                       
Query: 217 tgctttgtcatgagttttggagactgctttatcataataaagttgttactggaatgtttt 276
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |  ||
Sbjct: 781 tgctttgtcatgagttttggagactgctttatcataataaagttgttactggaaggggtt 722

                                                                       
Query: 277 tggggggcaaacaggacaacagtacgggtatgcaagtgtaggtagggatcaggaatagaa 336
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 721 tggggggcaaacaggacaacagtacaggtatgcaagtgtaggtagggatcaggaatagaa 662

                                                                       
Query: 337 atgttgttagcagtgatctgctacaataccgtaggcactagattagaaaataagtaggag 396
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 atgttgttagcagtgatctgctacaataccgtaggcactagattagaaaataagtaggag 602

                                                                       
Query: 397 aggtgacttataatgcagaaagatattttatcaactgtacaaatgacctggaatcaagag 456
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 aggtgacttataatgcagaaagatattttatcaactgtacaaatgacctggaatcaagag 542

                                                                       
Query: 457 cagcctgagataaactttataagtgtatcaagtatccctgaaatgacaggatataggaag 516
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 541 cagcctgagataaactttataagtgtatcaagtatccctggaatgacaggatataggaag 482

                                                        
Query: 517 gaggaggaggaagacaccaagagatgaagtagaanagtgaggttg 561
           |||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 481 gaggaggaggaagacaccaagagatgaagtagaaaaatgaggttg 437


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space:   524001
Effective search space used:   524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)