BAC Information

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BAC

Clone NameMSMg01-472L20
Chromosome15 (Build37)
Map Location 94,736,610 - 94,736,844
singlet/doubletsinglet
Overlap geneTmem117
Upstream geneD630010B17Rik, Adamts20, Pus7l, Irak4, Twf1
Downstream geneLOC100043315, Nell2, Dbx2, LOC100042684, LOC667849, EG629300, LOC667864, Tmem16f, LOC100043329
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-472L20.T7 (MSMg01no472_l20.b1)MSMg01-472L20.TJ (MSMg01no472_l20.g1)
ACCAG555202AG555203
length797760
length of high quality
(start - end)
273 (46 - 318)209 (323 - 531)
definitionCHROMAT_FILE: MSMg01no472_l20.b1 PHD_FILE: MSMg01no472_l20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:28 2005CHROMAT_FILE: MSMg01no472_l20.g1 PHD_FILE: MSMg01no472_l20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAGAGGATCCG
CGGAATTCATTTTTCCCTCATGGCCTCGCTAACAAGAGAACTGAGCTTGA
ACTTTGCATGGTTCGTGGCTTCTGTTGATTTAGCCTAACATTTCCCTCCT
TTGTGATAACTGCCATATTGCTTAGTGGAAGCTAAATGTTGTCATGTCAC
TTTGCCACCTCTCCCATGTTGTTCCTGTTTGAGTTTGCATTGATTACGGT
AGTAGAAACTTATTTTTGATTATTATTATTTGATTATATTTGATTATTAT
TATTTGATTATATTTGATTATTATTGATTACGTTAGTACATTCTTACCTT
TTATTATATTTTTCTTAATCTCTTACTGTTCAATTTCTTTTCTTTTCTCC
GTTTTTTATCTCTTTCCCCATTCGTTCGTCTCATTCTATCTCACCCTCCT
TTTTTCTACCTCCATCTATACCTCTATATTTATCTCTCTTTCCTCTTTTA
TTCTTCATTCCCCTTTCATTTTACTCAATTTGTTTCCATTCTCTTATCCA
CACCTATCTTTTGTATACACTTATTTTCCTTTATCATCGTTTTTTCTCGA
TTTCCCTCCTATTCCTCTTTATCACTTTCTTTCCCACGCAATCTTTCCCT
TATTTTTCTCACCTTCTATAACATCCCCTATATACATCTTTAATATTTAT
ATCCTACGTCCTCTTAGTATCTTCGTTTCTTCTTTCTTACTCCCCTTTTC
TCCATTTTATTTCTAATATTTTCTTATCATTTTACCTCTCTTTTTTC
NAACGATGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGTTCTGTAGGCTGTGCGTATGTGG
GTAGGTATTACTCATGTCAGAATAGCATTTCTTTGGCCAGAGCTGTCAGT
GGATCCTATAGTTAGCTTGTCCTTGTATTTTCAATGCCAGAGGTATTTAT
GATTTTAAGTGCACCATGCATGGCTATTAAAGGCATAAGAAACAGCAGGT
GTATGGTTCCAACTGCTTGGTAAACAATTATAGCAAGATGTTTATTAAGG
CTGGCTCTCAAATGATATTTTTTTGTATAGTTCCATTCTGCACTTTAAAT
TTGGCAAGTTGCATGCTCAAAAGCAGATCAAAACAAGAGAGCTTTAAAAG
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA
AGAAAGAAATGCAGCAACACCAGTATATGACAGAAAAATAAATCATTTCC
TTTAAAAATGATCTCCCTTCAGCTCCTCAAGAAACATGTAACTGCTGCTC
ATGAAATAAAATTATAAGCAATTTAGGGGTATACAATTTGTTACCTTGCC
TAGAATTAAGCTTCTTATAAATCCCTTTTGAAACGGCTTTTTGCAACCTA
GCACTCGAATTTAACCCTTTTGGGGCGCGGTTAACCAACTAATGGGCTCT
AATCTCACCCTTCTTTCCCCCCTTTTCTTGGCAACTTATTTTTTATTCTT
TTTTGCCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no472_l20.b1 MSMg01no472_l20.b1 CHROMAT_FILE:
MSMg01no472_l20.b1 PHD_FILE: MSMg01no472_l20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:28 2005
         (273 letters)



>mm_chr15_94736388_94737061
          Length = 674

 Score =  431 bits (223), Expect = e-125
 Identities = 232/235 (98%), Gaps = 1/235 (0%)
 Strand = Plus / Plus

                                                                       
Query: 23  tcatggcctcgctaacaa-gagaactgagcttgaactttgcatggttcgtggcttctgtt 81
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 tcatggcctcgctaacaaagagaactgagcttgaactttgcatggttcgtggcttctgtt 282

                                                                       
Query: 82  gatttagcctaacatttccctcctttgtgataactgccatattgcttagtggaagctaaa 141
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 gatttagcctaacatttccctcctttgtgataactgccatattgcttagtggaagctaaa 342

                                                                       
Query: 142 tgttgtcatgtcactttgccacctctcccatgttgttcctgtttgagtttgcattgatta 201
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 343 tgttgtcatgtcactttgccacctctcccatgttgttcctgtttgagtttgcactgatta 402

                                                                  
Query: 202 cggtagtagaaacttatttttgattattattatttgattatatttgattattatt 256
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 tggtagtagaaacttatttttgattattattatttgattatatttgattattatt 457


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 674
Length adjustment: 9
Effective length of query: 264
Effective length of database: 665
Effective search space:   175560
Effective search space used:   175560
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)