BAC Information

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BAC

Clone NameMSMg01-474J20
Chromosome15 (Build37)
Map Location 95,855,988 - 95,856,230
singlet/doubletsinglet
Overlap genenone
Upstream geneTmem117, LOC100043315, Nell2, Dbx2, LOC100042684, LOC667849, EG629300, LOC667864, Tmem16f, LOC100043329
Downstream geneD030018L15Rik, LOC100043335, EG667869, LOC667874, LOC667894, Arid2, Sfrs2ip, Slc38a1, Slc38a2, LOC667941, LOC546651, Slc38a4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-474J20.T7 (MSMg01no474_j20.b1)MSMg01-474J20.TJ (MSMg01no474_j20.g1)
ACCAG556636AG556637
length780748
length of high quality
(start - end)
243 (73 - 315)242 (74 - 315)
definitionCHROMAT_FILE: MSMg01no474_j20.b1 PHD_FILE: MSMg01no474_j20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:08 2005CHROMAT_FILE: MSMg01no474_j20.g1 PHD_FILE: MSMg01no474_j20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAATTAGTCCTCGTGTCGCTAATACGATCCTATTTCGAGACGATCCGCGG
AATCATAAATTACACAAATACTGAAGAAGGTTCAGACTGAAATGCTGGAA
ATGAAATCCTCAATAGGTCACGTAGGAATCTCCTCGGAAAGCCTTTACCA
GCAGACTAGATAGAGGTGAATATAGAATGTCAGGGCTTGCAGAAGAGTTA
CAATGTTCAGACCATGACAGATTCATTAATAAACTAGCAGCACAATCATA
ATCGCTTTAAAATGCCAACTCTACAAATCGTGAAGATTAGGAAAAGAGAG
AGGGAAAATGCTCATGGCTAATAGCATAGAAAACATTTTCAATAAACTCA
CAGCAGAAAGCTTGCCAAATCTGGAGAAAGAGATGCCTATCCAGGTACAA
GAGATATTTAGAACACAAAACAGCCAAGACCAGAGAAGAGCCTACCCATA
CGGTTGTCTTTTAAACGCTACATAAGAACAAAGACAGTATATTGAGACCT
GTTATAGAGGAACCCCAAGGTCATAAAGGCCGGCCCCTCCGAATGATAGC
AGACTTCTCTCCCGAAACTTTTATTAAACAGGGATGGATTGTTGTTACCT
CCAGCTCCTAAAAGGCGGGTATTTTTNAACCCCCGTTGGTTGGTGCACCC
GAAAAACTTCTTTGTTCTTTGGCCAAGGGAGAATATAAAAAATTGGCCTT
ATCCCGTACTGGGAGGGGCCTCCCCCCAAAATCCTAAGTCAGCTTCTCCT
CAACGAAATTTATTGGGTGGAAACCTCTTN
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTCTTCACAGCTGANACTTCAACATC
TGCGGGTGACCTTGCCCCACTCTAAGGTCTAGAATTCTTACCACTGAAGT
GGAAAGACTTAAGGGTTCTTTGGAAAGTCATTTGTGTCATATGGTGTTTT
GCTAGGGCAAACATGTGAAGGAGTGTTTTCTCAAGTGGATGCAAGTGAAT
GACATTTTGCTAAAGCAAGCACGTGAAAGGACTTGTGATGAAGGATTCTT
TGCTAACGACACACATGTTTTGTTCTGTCTTACATTGCATAGTTCAGTAC
CATTTGTCAGGACTCCAAAGAGAGAAACGCACCAAGAAACTTTTAGTGTT
GTTCTGGCAGTTTCTTGCACTTCCACGGACTCAGGCCAATCAGCAGAGTG
ATGTCATGTGCTAAGGCAAGACCCGTAGGCGACAACACATGATGTTTGAA
GGGAGTATAAATAGGACTCAACAGACTGTGAGAGGCGCTTGCTGTGAGAG
CTAGCTCTCCATCTCCTCTTAGTCTTGAGTCTCTGACGACCCTTTGCTTC
ATTGAAAAAGGTATGGTAAAATACTTCCCCTTGGCGTCTCTGGTTGTTTT
TTGTTTTTTTGTCGCTAACCTAGCCGGCCCCCCCTCCCCCCCGGAGAAGC
TCTTCCCTCCGTTGGCAGATACCACTTCACCCTTCCTACTCCCTACTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no474_j20.b1 MSMg01no474_j20.b1 CHROMAT_FILE:
MSMg01no474_j20.b1 PHD_FILE: MSMg01no474_j20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:08 2005
         (243 letters)



>mm_chr15_95855788_95856430
          Length = 643

 Score =  424 bits (219), Expect = e-123
 Identities = 237/243 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaagaaggttcagactgaaatgctggaaatgaaatcctcaataggtcacgtaggaatctc 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 gaagaaggttcagactgaaatgctggaaatgaaatcctcaataggtcaagtaggaatctc 260

                                                                       
Query: 61  ctcggaaagcctttaccagcagactagatagaggtgaatatagaatgtcagggcttgcag 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 ctcggaaagcctttaccagcagactagatagaggtgaatatagtatgtcagggcttgcag 320

                                                                       
Query: 121 aagagttacaatgttcagaccatgacagattcattaataaactagcagcacaatcataat 180
           |||||||||||||||||||||| ||||||||||||||||||||||||||||||| | || 
Sbjct: 321 aagagttacaatgttcagaccacgacagattcattaataaactagcagcacaattagaaa 380

                                                                       
Query: 181 cgctttaaaatgccaactctacaaatcgtgaagattaggaaaagagagagggaaaatgct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cgctttaaaatgccaactctacaaatcgtgaagattaggaaaagagagagggaaaatgct 440

              
Query: 241 cat 243
           |||
Sbjct: 441 cat 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)