BAC Information

Click to search

BAC

Clone NameMSMg01-475C05
Chromosome15 (Build37)
Map Location 94,536,880 - 94,679,443
singlet/doubletdoublet
Overlap geneTmem117
Upstream geneLOC100042627, LOC100042631, D630010B17Rik, Adamts20, Pus7l, Irak4, Twf1
Downstream geneLOC100043315, Nell2, Dbx2, LOC100042684, LOC667849, EG629300, LOC667864, Tmem16f, LOC100043329
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475C05.T7 (MSMg01no475_c05.b1)MSMg01-475C05.TJ (MSMg01no475_c05.g1)
ACCAG557035AG557036
length757719
length of high quality
(start - end)		250 (82 - 331)459 (82 - 540)
definitionCHROMAT_FILE: MSMg01no475_c05.b1 PHD_FILE: MSMg01no475_c05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:49 2005CHROMAT_FILE: MSMg01no475_c05.g1 PHD_FILE: MSMg01no475_c05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,679,194 - 94,679,443)(94,536,880 - 94,537,338)
sequence
CGCGCCCCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGA
ACACCGCGGAATTCTGACTTATTCCCCGAACTCTTTGACCAAAAGGTAAA
GATTATATAATTATTATTCAAAGTGTATCAATATATAAATGCCATTTACA
ACAAAAAGACCAATTGGAGTAATTATACTATAATTGGAAGAAAACTAGAC
TTCAGTGGTTAAAGTATTTGTCACCATCACTTATAGTTATGTTTGTACCC
TAGCAAGTTAATTATCCTCAGAAAACAGAATTGACTTTTATATATTTAAA
ATGGATATAACATCCTGAAGCTCTCCAATCCTTGTTTTCAAAAGCTAGGA
GGCTAGCACACCACACATAATATAGTTTAAATTAGAGGTTCCCCCATATG
CTCAGAGGTGTGAACACTTGATGCCTAGTTGGGGACTTGGCGGGGGGAGG
TTCACATCGCTGGATTAAATACTCTCCTGTGTGCATACTGATTCTTCCCT
CCCCTTTTTCCCTTCTCTGTTCCATCCTCTCTTTTTGTATCCTCCTCTTC
TATCCCCCTCTATACACCCTCCCCCACTTTCCCTTTCTTCACCCTTTTTT
TTCCTTTCCTCGCCCCCCCAATTATTCCGCATTATACCGCTCCCTATTTT
CCATTTCCCCCTCCCCTCTTCTCCCCTTAATTTTTCTCTTCTATACCCCC
CCTTTCCGCCCCCCCCTTTTCCTCCCCCTTTATTTTCCTCTCTTCATCCT
CTCCCCN

CCCCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTTTATGCATAGAAGCCT
CAAGCTTTGATATGAATACCAATGGAACAGCACTCTCTGAGAACACAGGT
TTTATGATTTTACACTTATTATATAAAGTCATATCTGTCTAACCAGAGAA
CCCTTGTCCCTAATGATATTCTAGAGTTTTTGTTAGATATTTCCTTTGTT
GCTGTGAGCTTTTTGGTACTGACAGTCAAGGCATAAGAGGATCTTCTCCC
ATTGCCTCTTAGCTCTAAAATATTTTAGTTATTTTTGTTGTGTCGTTTTC
AATTAATTTAACTTTTAAGGAAAAATTATTTTGTTAGAAACTATAAATTC
ACACAAATGTGTAATAAATATTTCACATACTCATTTTAGTCTTATTAAAA
GTGGGTTTCAATTAATGCTCAACTGCGGTTATCTAATTTAATTCTATCTT
TCGTATTCTTTATTCTAGTGATGTGAAATAAGTCCTATGTTTAGNCCAGT
TTTTAATATTAAAATGGTAAATATTAACTACATCTTGAATGGAATTATCC
TCCTGCTACTTTAGGGTGATTTAACGGGCTTAACAGCACTGCCCTGTACC
ATTAATTCTGACGACGACTCCCCGCCCCATGTGTCCCGGGTGCCTACCTC
TCCTTATTCGCCTCCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_c05.b1 MSMg01no475_c05.b1 CHROMAT_FILE:
MSMg01no475_c05.b1 PHD_FILE: MSMg01no475_c05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:49 2005
         (250 letters)



>mm_chr15_94678994_94679643
          Length = 650

 Score =  460 bits (238), Expect = e-134
 Identities = 247/250 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctttgaccaaaaggtaaagattatataattattattcaaagtgtatcaatatataaatg 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 450 tctttgaccaaaaggtaaagattatataattattattcaaagtgtaacaatatataaatg 391

                                                                       
Query: 61  ccatttacaacaaaaagaccaattggagtaattatactataattggaagaaaactagact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 ccatttacaacaaaaagaccaattggagtaattatactataattggaagaaaactagact 331

                                                                       
Query: 121 tcagtggttaaagtatttgtcaccatcacttatagttatgtttgtaccctagcaagttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tcagtggttaaagtatttgtcaccatcacttatagttatgtttgtaccctagcaagttaa 271

                                                                       
Query: 181 ttatcctcagaaaacagaattgacttttatatatttaaaatggatataacatcctgaagc 240
           ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 ttagcctcagaaaacagagttgacttttatatatttaaaatggatataacatcctgaagc 211

                     
Query: 241 tctccaatcc 250
           ||||||||||
Sbjct: 210 tctccaatcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 650
Length adjustment: 9
Effective length of query: 241
Effective length of database: 641
Effective search space:   154481
Effective search space used:   154481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no475_c05.g1 MSMg01no475_c05.g1 CHROMAT_FILE:
MSMg01no475_c05.g1 PHD_FILE: MSMg01no475_c05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:49 2005
         (459 letters)



>mm_chr15_94536680_94537538
          Length = 859

 Score =  857 bits (443), Expect = 0.0
 Identities = 455/459 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctttatgcatagaagcctcaagctttgatatgaataccaatggaacagcactctctgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctttatgcatagaagcctcaagctttgatatgaataccaatggaacagcactctctgag 260

                                                                       
Query: 61  aacacaggttttatgattttacacttattatataaagtcatatctgtctaaccagagaac 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacacaggttttatgatcttacacttattatataaagtcatatctgtctaaccagagaac 320

                                                                       
Query: 121 ccttgtccctaatgatattctagagtttttgttagatatttcctttgttgctgtgagctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccttgtccctaatgatattctagagtttttgttagatatttcctttgttgctgtgagctt 380

                                                                       
Query: 181 tttggtactgacagtcaaggcataagaggatcttctcccattgcctcttagctctaaaat 240
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 381 tttggtactgacagtcaaggcataagaggatcttctcccattggctcttagctctaaaat 440

                                                                       
Query: 241 attttagttatttttgttgtgtcgttttcaattaatttaacttttaaggaaaaattattt 300
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 441 attttagttatttttgttgtgtcgttttcaattaagttaacttttaaggaaaaattattt 500

                                                                       
Query: 301 tgttagaaactataaattcacacaaatgtgtaataaatatttcacatactcattttagtc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgttagaaactataaattcacacaaatgtgtaataaatatttcacatactcattttagtc 560

                                                                       
Query: 361 ttattaaaagtgggtttcaattaatgctcaactgcggttatctaatttaattctatcttt 420
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 561 ttattaaaagtgggtttcaattaatgctcaactgcgcttatctaatttaattctatcttt 620

                                                  
Query: 421 cgtattctttattctagtgatgtgaaataagtcctatgt 459
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cgtattctttattctagtgatgtgaaataagtcctatgt 659


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space:   381201
Effective search space used:   381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |