BAC Information

Click to search

BAC

Clone NameMSMg01-475N23
Chromosome15 (Build37)
Map Location 48,047,263 - 48,047,613
singlet/doubletsinglet
Overlap geneCsmd3
Upstream geneLOC665130, LOC100039485, LOC100039493
Downstream geneEG665146, LOC100039600
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475N23.T7 (MSMg01no475_n23.b1)MSMg01-475N23.TJ (MSMg01no475_n23.g1)
ACCAG557597AG557598
length780780
length of high quality
(start - end)
442 (50 - 491)352 (86 - 437)
definitionCHROMAT_FILE: MSMg01no475_n23.b1 PHD_FILE: MSMg01no475_n23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:47 2005CHROMAT_FILE: MSMg01no475_n23.g1 PHD_FILE: MSMg01no475_n23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGCAGACAATCC
GCGGAATTCTCAGTAGAGGACCCCCAAATGGCTTCGAAGCACTTAAAGAA
AATGTTCAAAGTTCTCAGTTATCTGGGAAATGCAAATCAAAACTACTCTG
AGGTTACATCTTAAACCATTCATAAAAGCTAAGATCATTAACTCAAATAA
TAGCACATGATCTCGAGGATGTAGAGCATAGGGAACACTGCCTCATTGCT
GATAGGGGTGCAAACTTGTATAACTACCTTGGAAATCATTTTGGTGATTT
CTCAGGAAACTCGAAATAGTTCTGCCTCTTATTTGCTGTTATATGACTCC
TGGGCATCTACCCAAAATATGATCTACCATCCTACAAAGGAACTTGCTCA
ACTATGTTCATAGCAGCTTTATTCATAATAGCCAGAAATTGGGAACAACC
TAGACTGAAGAGTGGGTAGTGAAAATGTGACACATCTACACAATGGAATA
CAAACTCAGCTATTAAAAACAAATACACCATGAATTTTGCTTGTAAAGGG
ATGAATGGAAGGAACTTGAGAATACCCCCCTGAGCGAGCTAATCGAGTCC
CCTCCCATAGGAGCTATTAACCCCTTTTTAACCAGAAACTAAACCCCAAA
AAAAGAAACGCCTGTTTTCTCCCTCCCACCCTCATAAATTCACCAAAAAG
GAAGGCCCCCCGGGGGGCGCTTGTATTTTCTTTAATCTCAACACCAAATT
TCTCCCGGCTATTCGGCTATAACGCGAGCG
CCCCCTTNTCCCATGATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTACATTTTGAA
CATCAAATCTCTATTAGATGTATAGCTAATGAAAACATTTGTTAATTACT
GGTCTTAAGTCTTTAAGATTAATTCAGAAAGTGTTGTTGAACACCAACAC
TTTACAGAAAAGTTTCATGATTTTTTCTCATAATTTCAGTTCATCAATTT
TCATGTTGGAATCTTTTTTTTTTCAATTAGGGTTTATTTTTATATAGGAT
AATTGATATATTCTATTTTCATTGTTCTGTATGTAGACATCTGTTTTTTT
TCCAGCATTACCTATTGAAAATTCCATTTTCTCTTGTGCATATTTTTTAC
ATATTTTATAAATAAATGAATTCAGTTACTTGAACTCATATCTGAGGCTC
CTATTTTGATCCATTTATCACAATGTCAGGTTTTACCACATTAAAATACT
GGTTTGGATTACCATAGCCCCTGTTTTATATTTTTGCGACCCTAGAGGGC
GCCCCACTCTCGCTCCTCCCCCTTGCTTATTATTTCCCTAACTACTTATG
CACACCGTCGCCTCTAATTCTCTGCCCGTCCGCACCTTTCTTTTCCCTCT
CCTTTCCCCCGCCTCGCTCCCACTCTACTACCCTTTTTTNTTCCCCCCTT
TCACCCCGTCTCCCCTCCCTCCCCTTTCTCTTCCACCTTTGTCCCTCCCC
TTTCACCCTTTCCCCTTTCCCCTATTACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_n23.g1 MSMg01no475_n23.g1 CHROMAT_FILE:
MSMg01no475_n23.g1 PHD_FILE: MSMg01no475_n23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:47 2005
         (352 letters)



>mm_chr15_48047111_48047861
          Length = 751

 Score =  658 bits (340), Expect = 0.0
 Identities = 349/352 (99%), Gaps = 1/352 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgtacattttgaacatcaaatctctattagatgtatagctaatgaaaacatttgttaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tttgtacattttgaacatcaaatctctattagatgtatagctaatgaaaacatttgttaa 444

                                                                       
Query: 61  ttactggtcttaagtctttaagattaattcagaaagtgttgttgaacaccaacactttac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ttactggtcttaagtctttaagattaattcagaaagtgttgttgaacaccaacactttac 384

                                                                       
Query: 121 agaaaagtttcatgattttttctcataatttcagttcatcaattttcatgttggaatctt 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 383 agaaaagtttcatgattttttctcataatttcagttcatcaattttcatgttggaatc-t 325

                                                                       
Query: 181 ttttttttcaattagggtttatttttatataggataattgatatattctattttcattgt 240
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttttttttcaattagggtatatttttatataggataattgatatattctattttcattgt 265

                                                                       
Query: 241 tctgtatgtagacatctgttttttttccagcattacctattgaaaattccattttctctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tctgtatgtagacatctgttttttttccagcattacctattgaaaattccattttctctt 205

                                                               
Query: 301 gtgcatattttttacatattttataaataaatgaattcagttacttgaactc 352
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 204 gtgcatattttttacatattttataaatagatgaattcagttacttgaactc 153


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 751
Length adjustment: 9
Effective length of query: 343
Effective length of database: 742
Effective search space:   254506
Effective search space used:   254506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)