BAC Information

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BAC

Clone NameMSMg01-476A08
Chromosome15 (Build37)
Map Location 100,143,331 - 100,143,559
singlet/doubletsinglet
Overlap geneMettl7a
Upstream genePrpf40b, Fmnl3, Tegt, C230021P08Rik, 4930556P03Rik, Faim2, LOC545137, Aqp2, Aqp5, Aqp6, Racgap1, LOC100043473, Accn2, Smarcd1, Gpd1, 2310016M24Rik, Lass5, Lima1, LOC100043481, LOC100042918, 1700030F18Rik, Gm920, D330037H05Rik, 4930478M13Rik, Dip2b, Atf1, 4930478A21Rik, EG432981
Downstream geneENSMUSG00000058057, LOC554292, Ubie, Yghl1-4, Slc11a2, EG432982, Letmd1, BC035295, Tcfcp2, Pou6f1, Dazap2, BC004728, Bin2, Ela1, Galnt6, Slc4a8, Scn8a, EG668225, Ankrd33, Acvrl1, Acvr1b, Grasp, Nr4a1, 9430023L20Rik, 6030408B16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476A08.T7 (MSMg01no476_a08.b1)MSMg01-476A08.TJ (MSMg01no476_a08.g1)
ACCAG557710AG557711
length750745
length of high quality
(start - end)
249 (71 - 319)233 (329 - 561)
definitionCHROMAT_FILE: MSMg01no476_a08.b1 PHD_FILE: MSMg01no476_a08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:59 2005CHROMAT_FILE: MSMg01no476_a08.g1 PHD_FILE: MSMg01no476_a08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:59 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAATACGATCCGCGGA
ATTCACTCTGTTCCACCAACTGGCCTCCAATTCAGAAGTTTGCCTGCCTC
TGCCTCCCAAGTGCTGGGATTAAAGGCATGCACCACCACGTCTGGCTTGT
TTTGCTTTTAGACAAAGTTTCGCTCTGCAGCTTCATAAGCCTGCAACACA
GGTGAAGTCCAGGTTGGCTTCAAACAGGTGGCAATCCTCCTATCTCAGCC
CCCAGGTACTAGAATCATAGGTGTGAGCCACCATGACCTATCCTTTGTTT
CCCTGACAGTTCTCAGTGATTATCTTAGGCTGGACTAGAACTTGCTATAT
AGCCTGGAATAGCCTTGAACTCATGACCTCCCTGCTTTAATCTTCCGAGT
GTCCATGCACTTATATGCACACACACACAAACACAATCACAATAACAAAT
AATTTTAGAGAGATGGCTCAGAGGTTAGGAACACTGGCTGTTCTTCCAGA
GGACCCAAGCTCAGTTCCCAGCAACCACATGGCAGCTCACAGCTGTCTGC
AACTCCAATTCCATGGAACCCAACGCCCTCTATCAGCCTCCACAGACCCT
GCATGCTCACGTTACACAGACACTCAACACATCCGTGCACACAAAATAAT
AAGTCACACCACTGACACTGCTTAAAGACACCGGAAGGCTACTCCGCCCA
TTTACTTGCTTGTTTCTTGCGCCAATGTGCCCAACCTGATCTCCACTCTC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTATGACCGCAAAAATACATCTATT
GCTTAGGTTGGCTGCTCCTTTTAAAAAGTTTAATACAGTGTCCCACTGTA
GCCAGGCTGGCCTGTAACTTAAGGTCATCTTCCCTTAGCCTCCCTTGTGT
GCAGATTCAGGGCATGCACTCTCATACCCAGCTAGCTCTGTATTAAATGC
GATATAGTTTGAAACGACATTACCCAGATAATGCCTTACTCCATTTTAAC
CTACCTGTGTCTTCTCAAAGTCTTCTTCCAGCCACTGGAATTTGAAACTT
GAGGCATTTTATAAAGTGGATTTCCCAAAGACACTATCCTTAAAATGTGT
GTGTGTGTGTGTTTCTTCTCAGGGAGGGGCTTTTTACTTCATGGAACACG
TGGCAGATGAACGGTCTACCTGGAATTACTTCTGGCAGCAGGTCCTGGAT
CCTGTCTGGTTCCTTTTTTTTGATGGATGCAATCTGACGAGAGAGAGCTG
GAAGACCCTAGAGCAGGCCAGCTTCTCGAAGCTAAAGCTACAGCACATCC
AGGCCCCCCTCTCCTGGACATTGGCGCGGCCCCACATCTATGGCTATGCT
GCGAAATATATTGTTTTGTCGGGAGAGATTCGTTCTGCTCCCAGCCGGTT
CTCCCCTCCGNTCTATATGTCACCATCCCCTGTTCCCCATCCACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_a08.g1 MSMg01no476_a08.g1 CHROMAT_FILE:
MSMg01no476_a08.g1 PHD_FILE: MSMg01no476_a08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:59 2005
         (233 letters)



>mm_chr15_100143131_100143763
          Length = 633

 Score =  435 bits (225), Expect = e-126
 Identities = 228/229 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagccactggaatttgaaacttgaggcattttataaagtggatttcccaaagacactatc 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 cagccactggaatttgaaacttgaggcattttacaaagtggatttcccaaagacactatc 260

                                                                       
Query: 61  cttaaaatgtgtgtgtgtgtgtgtttcttctcagggaggggctttttacttcatggaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttaaaatgtgtgtgtgtgtgtgtttcttctcagggaggggctttttacttcatggaaca 320

                                                                       
Query: 121 cgtggcagatgaacggtctacctggaattacttctggcagcaggtcctggatcctgtctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cgtggcagatgaacggtctacctggaattacttctggcagcaggtcctggatcctgtctg 380

                                                            
Query: 181 gttccttttttttgatggatgcaatctgacgagagagagctggaagacc 229
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttccttttttttgatggatgcaatctgacgagagagagctggaagacc 429


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 633
Length adjustment: 9
Effective length of query: 224
Effective length of database: 624
Effective search space:   139776
Effective search space used:   139776
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)