Query= MSMg01no481_e16.b1 MSMg01no481_e16.b1 CHROMAT_FILE:
MSMg01no481_e16.b1 PHD_FILE: MSMg01no481_e16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:53 2005
(671 letters)
>mm_chr15_93569686_93570757
Length = 1072
Score = 1044 bits (540), Expect = 0.0
Identities = 633/672 (94%), Gaps = 18/672 (2%)
Strand = Plus / Plus
Query: 1 aagtagtttataatt--ggggggggggctcaagcatacatgtttgtgtattaacaacttc 58
||||||||||||||| ||||||||||||||||||| ||||||||||| |||||| ||||
Sbjct: 212 aagtagtttataattggggggggggggctcaagcatccatgtttgtgttttaacatcttc 271
Query: 59 aattattgacactaagatttatttatttatttatttgcacaagatcattggtcatattgt 118
|||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 272 aattattgacactaag----atttatttatttatttgcacaagatcattgg--------- 318
Query: 119 tctaaagctattaattacacatttccaattttttaagtaatatataattttttgtctgat 178
|||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 319 tctagagctattaatcacacatttccaatttcttaagtaatatataattttttgtctgat 378
Query: 179 gtgtaaatttgccttgttacatatttatctatgaacatcaggagaaataatagctcccac 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 379 gtgtaaatttgccttgttacatatttatctatgaacatcaggagaaataatagctaccac 438
Query: 239 caggctttgtgatttattctgtacaggtgtagagcattacagaagagaggtttcctgggc 298
||||||| |||| ||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 439 caggcttcgtgaattattctgtacaggtgtagagcattacagaagagaggcttactgggc 498
Query: 299 agaattaggtcactaggggtaagtctttgagagtgaaggactaggagatagattcctgaa 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 agaattaggtcactaggggtaagtctttgagagtgaaggactaggagatagattcctgaa 558
Query: 359 aggcagacagatggcggcaggcacagataaatagtaaagactacatacttctggcttctt 418
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 559 aggcagacagatggcggcaggcacagataaatagtaaagactacatacttctggcttcct 618
Query: 419 cctccccttccagacccaaggcgaaggttttcagatggtcttttccattatggtgaggcc 478
|||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||| |
Sbjct: 619 cctccccttccagacctaaggtgaaggtcttcagatggtcttttccattatggtgagggc 678
Query: 479 tt-gtgttcctcttttaatcctgtgttctctgctttcccgtccatttaccaggaagccct 537
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 679 tttgtgttcctcttttaatcctgtgttctctgctttcccgtccatttaccaggaagcc-t 737
Query: 538 c-agtgcctgttcccaccaccgctagactgcactccttctggcgctctgctgcctcagct 596
| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct: 738 ccagtgcctgttcccaccaccgctagactgcactccttctggcgcgctgctgtctcagcc 797
Query: 597 atcacagatggaaatccttcaaacaccatgaaccaacatgaactttaagccatgaaatgg 656
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 atcgcagacggaaatccttcaaacaccatgaaccaacatgaactttaagccatgaaatgg 857
Query: 657 cttctgctctgt 668
||||||||||||
Sbjct: 858 cttctgctctgt 869
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1072
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1062
Effective search space: 701982
Effective search space used: 701982
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no481_e16.g1 MSMg01no481_e16.g1 CHROMAT_FILE:
MSMg01no481_e16.g1 PHD_FILE: MSMg01no481_e16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:53 2005
(628 letters)
>mm_chr15_93779961_93780989
Length = 1029
Score = 1166 bits (603), Expect = 0.0
Identities = 626/641 (97%), Gaps = 13/641 (2%)
Strand = Plus / Minus
Query: 1 ctcacagggctcaggccatacatggcaaggccaacattgacttttaggggaggtaatctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 ctcacagggctcaggccatacatggcaaggccaacattgacttttaggggaggtaatctg 615
Query: 61 ccacaaagcttattagagctacttttaaagcaattttagaaaatatct-cccccccccaa 119
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 614 ccacaaagcttattagagctacttttaaagcaattttagaaaatatctccccccccccaa 555
Query: 120 tttaagatcaatgggagtcatacataatcaagaacagctgtgagccacggagattctgac 179
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 554 tttaagatcaatgggagtcatacataatcaagaacagctgtgagccatggagattctgac 495
Query: 180 agaagatccatgctaagcatcacataagcagatcaaaaaagaacactgagaggatctgcc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 agaagatccatgctaagcatcacataagcagatcaaaaaagaacactgagaggatctgcc 435
Query: 240 ccttcttttatagatggataaatgggtaaatggatgaggagttgtgctccgctgagggga 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ccttcttttatagatggataaatgggtaaatggatgaggagttgtgctccgctgagggga 375
Query: 300 ccatgtgatggtttaatccctaaggaacaccctaaagactggtcttctgattttccatct 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ccatgtgatggtttaatccctaaggaacaccctaaagactggtcttctgattttccatct 315
Query: 360 cccattggccctccccaaagaagagtccaacgactttagtcgctgtggaacacagttcac 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 cccattggccctccccaaagaagagtccaacgactttagtcgctgtggaacacagttcac 255
Query: 420 aacacgtgacaaaggaaagtgttagctacactttgagcgttctggaatgaaaac------ 473
||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 254 aacacgtgacaaaggaaagtgttagctacacttcgagcgttctggaatgaaaacagccta 195
Query: 474 ------ttagtagtcagctcaagtcactgatctatacccaagagttgacaatactgagtc 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 cctggcttagtagtcagctcaagtcactgatctatacccaagagttgacaatactgagtc 135
Query: 528 catcagtcactaagcacgactggtgacaaatgtccttgttgctttggaaaatcagaaagg 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 catcagtcactaagcacgactggtgacaaatgtccttgttgctttggaaaatcagaaagg 75
Query: 588 aaaaaaggtacaaaccactgtttcttacacttcaatctgtt 628
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 74 aaaaaaggtacaaaccactgtttcttacacttcaatctgtt 34
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1029
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1019
Effective search space: 629742
Effective search space used: 629742
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
