Query= MSMg01no481_o01.b1 MSMg01no481_o01.b1 CHROMAT_FILE:
MSMg01no481_o01.b1 PHD_FILE: MSMg01no481_o01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:39 2005
(497 letters)
>mm_chr15_37641674_37642569
Length = 896
Score = 714 bits (369), Expect = 0.0
Identities = 456/507 (89%), Gaps = 38/507 (7%)
Strand = Plus / Plus
Query: 1 agaaaaccaagctaaaatccaccagtgtcctcgcctgtcttcttattccccagtgagcgt 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 agaaaaccaagctaaaatccaccagtgtccttgcctgtcttcttattccccagtgagcgt 260
Query: 61 ttgtggaggcatgttatggttagagcatgaccttgcaacaactctgtagctgtagagcaa 120
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 ttgtggaggcatgttatggttagagcatgaccttgc-acaactctgtagctgtagagcaa 319
Query: 121 agctagaattttagactctgacaccaggagtatgggttgccagcaaacacccaggagtat 180
|||||||||||||||||||||||||||||||||||||
Sbjct: 320 agctagaattttagactctgacaccaggagtatgggt----------------------- 356
Query: 181 gggttgccagcaaacacccagagtgcagaatgctacattcttacttcttttcaataga-- 238
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 ---tt-ccagcaaacacccagagtgcagaatgctacattcttacttcttttcaatagagg 412
Query: 239 --c------tgaagaacttgtttccttggaaggtaagatgtcagttcagcagacatatgt 290
| |||||||| || |||||||||||||||||||||||||| |||||||||||
Sbjct: 413 ttcatgtaatgaagaacatgcatccttggaaggtaagatgtcagttcaacagacatatgt 472
Query: 291 ttaaagctttaacaattattactttcagattagataattccacatttttaaaaagtactc 350
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 473 ttaaagctttaacaattattactttcagattcgataattccacatttttaaaaagtactc 532
Query: 351 aaaatcataaataatatcataaaaagcgtagaaggggagccgggcatggtggcgcacgcc 410
|||||||||||||||||||||| |||||||||||| ||||| |||||||| | |||||||
Sbjct: 533 aaaatcataaataatatcataagaagcgtagaaggagagccaggcatggtagtgcacgcc 592
Query: 411 tttaatcccagcacttgggaggcagagataggcagatttctgagttcgaggccagcctgg 470
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 593 tttaatcccagcacttaggaggcagagacaggcagatttctgagttcgaggccagcctgg 652
Query: 471 tctacagagtgagttccaggacagcca 497
|||||||||||||||||||||||||||
Sbjct: 653 tctacagagtgagttccaggacagcca 679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 896
Length adjustment: 10
Effective length of query: 487
Effective length of database: 886
Effective search space: 431482
Effective search space used: 431482
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no481_o01.g1 MSMg01no481_o01.g1 CHROMAT_FILE:
MSMg01no481_o01.g1 PHD_FILE: MSMg01no481_o01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:39 2005
(534 letters)
>mm_chr15_37840876_37841809
Length = 934
Score = 901 bits (466), Expect = 0.0
Identities = 513/536 (95%), Gaps = 15/536 (2%)
Strand = Plus / Minus
Query: 1 actcttgcacctgcttacaaggcttgtttattagttaggcacagcggaggcccgcgccat 60
||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 639 actctcgcacctgcgtacaaggcttgtttactagttaggcacagcggaggcccgcgccat 580
Query: 61 cttataatggcgattgctcgcggcacacacggctctcctcagagattactggcggcacac 120
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 cttataatggtgattgctcgcggcacacacggctctcctcagagattactggcggcacac 520
Query: 121 atgcgattgctcgcagcacgtaccggctctccacaaaactctgttctcagccttctttcg 180
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 atgcgattgcttgcagcacataccggctctccacaaaactctgttctcagccttctttcg 460
Query: 181 ctatcaacatgagaaatggctacttttggcaggacacagatcaagttaaattttgcagaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 ctatcaacatgagaaatggctacttttggcaggacacagatcaagttaaattttgcagaa 400
Query: 241 tatggattaagtgttttgattagcaattaaactgactgtagggttttttgtttggttggt 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 399 tatggattaagtgttttgattagcaattaaactgactgtagggttttttgtttggttg-t 341
Query: 301 ttttttttgtttttgttttttagtatcagtttttaatatcaagatatttatacactcaga 360
|||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 tttttttt-------ttttttagtatcagtttttaatatcaagatatttatacactcaga 288
Query: 361 agtattttagttgggccct--aatttgggaaactcaaattagaataaatcaaggagttaa 418
||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 287 agtattttagttgggcccttca-----ggaaactcaaattagaataaatcaaggagttaa 233
Query: 419 ttaattgttcttaattaaaggacaatttagagttgtaggcaggattccacagggagattc 478
||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 232 ttaattgctcttaattaaaggacaatttagagttgtaggcaggattccacaggaagattc 173
Query: 479 cagtgcctggggctatggcagtgcagagcagagattgctactcttgccagctaaag 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 cagtgcctggggctatggcagtgcagagcagagattgctactcttgccagctaaag 117
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space: 484176
Effective search space used: 484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
