BAC Information

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BAC

Clone NameMSMg01-482B22
Chromosome15 (Build37)
Map Location 24,464,258 - 24,464,944
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666989
Downstream geneLOC666999, LOC100040492, LOC100040499, LOC100040529, 9230109A22Rik, 4930445E18Rik, Basp1, EG432939, LOC100040583
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-482B22.T7 (MSMg01no482_b22.b1)MSMg01-482B22.TJ (MSMg01no482_b22.g1)
ACCAG562366AG562367
length730756
length of high quality
(start - end)
691 (37 - 727)590 (73 - 662)
definitionCHROMAT_FILE: MSMg01no482_b22.b1 PHD_FILE: MSMg01no482_b22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:57 2005CHROMAT_FILE: MSMg01no482_b22.g1 PHD_FILE: MSMg01no482_b22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCAT
TCCTGGTCAATTATAATAATAATACAATGGTTAAAAATAAACTCAAATAA
TCTGTTTCAAAGCAGTAAATCTGCCAACTCTATTTACTTAATAAAGGTCA
CATTCCACAATGTATAGAAATATTGCATATTTTGCCTACCTTTTGTTACT
TTTGTTTTCATGAAGACAGACTGGTAAGATGTCAGAAATATGTAGTGTAT
ATTTGACCCTTGTGGCTAGAAAGCATACTTGTGTATGTTCAATAACATTA
ATGGAGTCACATCTCTGAAAACCTTGGATTCTGGGACAGAAAAAAAAAAG
AGGGAGAAGAAGAAGAAGAGCTCAGATGTTGGTGACCTCTGTGACAGAAA
AGCATCTACTGAAAACTGGGTCCATGAAAGCACCTTTGAAAATATTTGGA
ACTGAAAAACTTTGATCATGAATGTACCCTCAAAGCCCAAGAATCTAAGT
AGACTCTAGAGGATATCATGAAAGCATTGCTAAAATAATGTAATATTTTA
TTAAGTAGAATTTCTGGCTTGAGGATATGTCTTAATAAAGACTATATATA
AACTTAAAAATTCTAAGACCCAAATTTGAAATAGTAACGTTCATCTTCTG
TCTGCCCTACTACATATATTAAAAGTAGGCAGTTTGTGGGAATTCAATTA
CAAAACCCAAAAGGGCTTGAGTTTTAGTGG
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCTCTTCCATCTCTTGTATTCTGTTGCT
GATGCTTGCATCTATAGTTCCAGATTTCTTTCCTAGGTTTTTATCTCCAG
CGTTGCCTCACTTTGGATTTTATTTATAGTGTCTACTTCCCTTTTTATGT
CTTGGATGGTTTTATTCAATTTCATCACCTGTTTGGTCGTGTTTTCTTGC
AATACTTTAAGGGATTTTTGTGTTTCCTCTTTAAGGTCTTCTACCTGTTT
AACAGTGTTCTCCTGTATTTCTTTAAGTGAGTTATTAAAGCCCTTCTTGA
TGTCCTCTACCATCATCATGAGATATGCTTTTAAATCTGGGTCTAGCTTT
TCGGGTGTGTTGGGGTGCCCAGGACTGGGTGGGGTGCAAGTGCTGCGTTC
TGATGATGGTGAGTGGTCTTGGTTTCTGTTAGTAAGATTCTTAAGTTTGC
CTTTAGCCATCTGGTAATCTCTGGAGTTAGTTGTTGTAGTTGTCTCTGGT
TAGATCTTGTTCCTCAGGTGTTTATGTTAGCCTCTATCAGCAGACCTGGG
AGACTAAATATCTCCTGAGTTTCAGTGTTCAGAGTATGCTCTGCAGATAG
GCTCTCCTCTTGCAGGGAAGGTACCCAGATATCTGGTGGTCAAACCTACC
ATCTGGCAGAAGTTGTGATCCACTCACAGAGGTCTAAAGATCCTGTGGAG
GGTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no482_b22.b1 MSMg01no482_b22.b1 CHROMAT_FILE:
MSMg01no482_b22.b1 PHD_FILE: MSMg01no482_b22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:57 2005
         (691 letters)



>mm_chr15_24464054_24465144
          Length = 1091

 Score = 1328 bits (687), Expect = 0.0
 Identities = 687/687 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcattcctggtcaattataataataatacaatggttaaaaataaactcaaataa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcattcctggtcaattataataataatacaatggttaaaaataaactcaaataa 264

                                                                       
Query: 65  tctgtttcaaagcagtaaatctgccaactctatttacttaataaaggtcacattccacaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tctgtttcaaagcagtaaatctgccaactctatttacttaataaaggtcacattccacaa 324

                                                                       
Query: 125 tgtatagaaatattgcatattttgcctaccttttgttacttttgttttcatgaagacaga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgtatagaaatattgcatattttgcctaccttttgttacttttgttttcatgaagacaga 384

                                                                       
Query: 185 ctggtaagatgtcagaaatatgtagtgtatatttgacccttgtggctagaaagcatactt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctggtaagatgtcagaaatatgtagtgtatatttgacccttgtggctagaaagcatactt 444

                                                                       
Query: 245 gtgtatgttcaataacattaatggagtcacatctctgaaaaccttggattctgggacaga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtgtatgttcaataacattaatggagtcacatctctgaaaaccttggattctgggacaga 504

                                                                       
Query: 305 aaaaaaaaagagggagaagaagaagaagagctcagatgttggtgacctctgtgacagaaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaaaaaaaagagggagaagaagaagaagagctcagatgttggtgacctctgtgacagaaa 564

                                                                       
Query: 365 agcatctactgaaaactgggtccatgaaagcacctttgaaaatatttggaactgaaaaac 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agcatctactgaaaactgggtccatgaaagcacctttgaaaatatttggaactgaaaaac 624

                                                                       
Query: 425 tttgatcatgaatgtaccctcaaagcccaagaatctaagtagactctagaggatatcatg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tttgatcatgaatgtaccctcaaagcccaagaatctaagtagactctagaggatatcatg 684

                                                                       
Query: 485 aaagcattgctaaaataatgtaatattttattaagtagaatttctggcttgaggatatgt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aaagcattgctaaaataatgtaatattttattaagtagaatttctggcttgaggatatgt 744

                                                                       
Query: 545 cttaataaagactatatataaacttaaaaattctaagacccaaatttgaaatagtaacgt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 cttaataaagactatatataaacttaaaaattctaagacccaaatttgaaatagtaacgt 804

                                                                       
Query: 605 tcatcttctgtctgccctactacatatattaaaagtaggcagtttgtgggaattcaatta 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tcatcttctgtctgccctactacatatattaaaagtaggcagtttgtgggaattcaatta 864

                                      
Query: 665 caaaacccaaaagggcttgagttttag 691
           |||||||||||||||||||||||||||
Sbjct: 865 caaaacccaaaagggcttgagttttag 891


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 691
Length of database: 1091
Length adjustment: 10
Effective length of query: 681
Effective length of database: 1081
Effective search space:   736161
Effective search space used:   736161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)