BAC Information

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BAC

Clone NameMSMg01-482L02
Chromosome15 (Build37)
Map Location 59,950,641 - 59,951,255
singlet/doubletsinglet
Overlap genenone
Upstream geneEG268809, LOC665565, Sqle, E430025E21Rik, Nsmce2, Trib1, LOC665602, EG632248, LOC665613, 4933412E24Rik
Downstream geneLOC100040266, LOC623048, LOC211832, LOC623094, EG632412, LOC100040311, D330050I23Rik, 9930014A18Rik, A1bg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-482L02.T7 (MSMg01no482_l02.b1)MSMg01-482L02.TJ (MSMg01no482_l02.g1)
ACCAG562797AG562798
length679723
length of high quality
(start - end)
629 (49 - 677)615 (76 - 690)
definitionCHROMAT_FILE: MSMg01no482_l02.b1 PHD_FILE: MSMg01no482_l02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:39 2005CHROMAT_FILE: MSMg01no482_l02.g1 PHD_FILE: MSMg01no482_l02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCACTTTTCGAAGAGGATCCGCGGAATTCTGTCTTCCCCAGTCTCTTCA
GTTCAGTTCTGTCTAAAGGTGCCCTCAGCTCAGTTTCTGCTTCCCCACTT
TGACCTCAGCATTCATGCATCTTTCAGAATACATGATCACACGGTAAAAA
GTTCTCCACAAGTTTACACATAAATCCAAATCATAAAACATTTAAGAAGT
TTACAACGGAGAATGTTTACATGCATATTCATTATTAGTAATTATCTGGC
TAAACATTTATCACCAATCACAGTTCCACAGGTTCATGGATGATTAAGAA
TCATAACTAAGTTATTAGTTATGTTTTGTATAGATAAACCCAGTCAATAT
TTTATCTTCTGTCCTAGCACCTATAATAAATCATTAGTGCAGTTTTTATA
ACCTCTTGTTAATAAATTTACAACCTTTCGGAATGTTCTCAGAGTAGTAG
AATACCTGCTCACTATCTCAGAAGCAATTAACTCATGAAAATAAGACTGA
CAGAGTTTTCATTGCAGTTTTGACTATCAGAAAGGATTTAAGAGCAGTGT
TATTAAAGAACTTAATAATTGTTACAAATTTAGGATTTCTTATAGGATCA
TCCTTAAGAATTGAGAAATCACCTGTCTATATAGCATCACTACAAGAAAA
CATATCTTTGTTTTTCTGCAGAGATCTGT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATTGTTCCATTCTTACTTATTTATA
ATATGAAAAGAGCCAGTCAGTTAAAAATAAATAAATAGAAGCTGTTAAAT
GCCCAAAATAAGCACTACCATTTAAATGGTTCTAATTAACTAACAGAAAA
GAATGACCATGCTTACCTGCCTGAGAATCATCTTAACACCAAGTATAACA
CTGGTAACATCTGACCTAGTAAAACAGATTTTTTTTTAATTTAGATAGGA
TATAAACTTGAGTGTTTATATTAAAAAGTGTTGAAGCAATTTCAGGGTAT
GCTCCAGAGAAAGGGAAAATTCACAAATTCAGCACTTTCGTGGATGTGTA
CAACAGGTGGTAGAAATAACAATGGCTAAATAAACATTCTATGACATAAA
GACCATGTCCTGATGGGTGTATCTTGGGGAACAGGAGTTTAAAAAAATTA
TCTTAAAGCACAGACACAAGGAAGCAACTTACTTGAAACAGACTTAACCT
GCATATGGGCACAGACAACCCCCGAAAAGAAAATATTCAAACAGGCATAT
TAAACCTGGTGTTGACACACAGAACATCAGGAAAGGCAGCTCAACTGGGT
CCCACTCAGTACATTCATGACCAGGGGACAGATCATCTAAGTATGGACGG
CGGGAGGTAGCATCCAGTGATGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no482_l02.g1 MSMg01no482_l02.g1 CHROMAT_FILE:
MSMg01no482_l02.g1 PHD_FILE: MSMg01no482_l02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:39 2005
         (615 letters)



>mm_chr15_59950441_59951455
          Length = 1015

 Score = 1062 bits (549), Expect = 0.0
 Identities = 599/619 (96%), Gaps = 8/619 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   attgttccattcttacttatttataatatgaaaagagccagtcagttaaaaataaataaa 60
           |||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||
Sbjct: 815 attgttccattcttacttatttgtaacatgtaaagagccagtcagttaaaaataaataaa 756

                                                                       
Query: 61  tagaagc---tgttaaatgcccaaaataagcactaccatttaaatggttctaattaacta 117
           |||||||       ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 tagaagccca----aaacgcccaaaataagcactaccatttaaatggttctaattaacta 700

                                                                       
Query: 118 acagaaaagaatgaccatgcttacctgcctgagaatcatcttaacaccaagtataacact 177
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 699 acagaaaagaatgaccatgcttacctgcctgagaatcatcttaacaccaagtatgacact 640

                                                                       
Query: 178 ggtaacatctgacctagtaaaacaga-tttttttttaatttagataggatataaacttga 236
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 639 ggtaacatctgacctagtaaaacagattttttttttaatttagataggatataaacttga 580

                                                                       
Query: 237 gtgtttatattaaaaagtgttgaagcaatttcagggtatgctccagagaaagggaaaatt 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 gtgtttatattaaaaagtgttgaagcaatttcagggtatgctccagagaaagggaaaatt 520

                                                                       
Query: 297 cacaaattcagcactttcgtggatgtgtacaacaggtggtagaaataacaatggctaaat 356
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 519 cacaaattcagcactttcgtggatgtgtacaacaggtggtagaaataagaatggctaaat 460

                                                                       
Query: 357 aaacattctatgacataaagaccatgtcctgatgggtgtatcttggggaacaggagttta 416
           ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct: 459 aaacattctatgacataaagaccatgtcctgttgggtgtatcctggggaacaggagttta 400

                                                                       
Query: 417 aaaaaattatcttaaagcacagacacaaggaagcaacttacttgaaacagacttaacctg 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 aaaaaattatcttaaagcacagacacaaggaagcaacttacttgaaacagacttaacctg 340

                                                                       
Query: 477 catatgggcacagacaacccccgaaaagaaaatattcaaacaggcatattaaacctggtg 536
           |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 339 catatgggcacagacagcccccgaaaagaaaatattcaaacaggcatgttaaacctggtg 280

                                                                       
Query: 537 ttgacacacagaacatcaggaaaggcagctcaactgggtcccactcagtacattcatgac 596
           |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct: 279 ttgacacacagaacatcaggtaaggcagctcaactgggttccactcagtacattcatgac 220

                              
Query: 597 caggggacagatcatctaa 615
           |||||||||||||||||||
Sbjct: 219 caggggacagatcatctaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1015
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1005
Effective search space:   608025
Effective search space used:   608025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)