Query= MSMg01no483_l01.b1 MSMg01no483_l01.b1 CHROMAT_FILE:
MSMg01no483_l01.b1 PHD_FILE: MSMg01no483_l01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:59 2005
(688 letters)
>mm_chr15_15957662_15958749
Length = 1088
Score = 1210 bits (626), Expect = 0.0
Identities = 670/685 (97%), Gaps = 2/685 (0%)
Strand = Plus / Minus
Query: 5 gaattcatttctgaagtaattattttatttgtactg-aaaaaaaagcaatatagccttac 63
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 888 gaattcgtttctgaagtaattattttatttgtactgaaaaaaaaagcaatatagccttac 829
Query: 64 ataagtgctatgctcttgatcagtgctttcaaaatgaaagaaatattcagaagaaagtag 123
| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct: 828 aaaagtgctatgctcttgatcagtgctttcaaaatgaaggaaatattcagaagaaagaag 769
Query: 124 acattttttcatacagtcaaaggtgatggtaaatgcaaaattgatttgtgaaaatctagt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 acattttttcatacagtcaaaggtgatggtaaatgcaaaattgatttgtgaaaatctagt 709
Query: 184 acattatccactaatatcgtctattttctttgagaaaccctaatgtgctcttctgttcag 243
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 708 acattatccactaatatcgtctattttctttgagaaaccctaatgtgctcctctgttcag 649
Query: 244 agaaagaatatactcttctcatttaaagtcagatcatgccaatcaaacaatcatagagac 303
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 648 agaaagaatatactcttctcatttaaagtcagatcatgccaatcaaacaagcatagagac 589
Query: 304 ataaattgccttggaaactgcagtagttaatacaataaaacttgagctttaacaggaatg 363
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 588 ataaattgccttggaaactgcagtagttaatacaataaaa-ttgagctttaacaggaatg 530
Query: 364 aaagaattattcatttcatgtttttaattaagtttatgtgtgtcaatatttcccaaagaa 423
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 529 aaagaattattcatttcatgcttttaattaagtttatgtgtgtcaatatttcccaaagaa 470
Query: 424 taatctttaaagcaatgaaaattgtgaataaagacagccaatctatttgatgaggaaggg 483
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 469 taatctttaaagcaatgaaaattgtgaataaagacagccactctatttgatgaggaaggg 410
Query: 484 aaagtagctatatactctcagtcactgccaaataccatgataatgctgcgaatttggctt 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 aaagtagctatatactctcagtcactgccaaataccatgataatgctgcgaatttggctt 350
Query: 544 acgaagctggagcttaggctcagaataggtccagaatatatcaattttatttcaatttac 603
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 349 acgaagctggagcttaggctcagaataggtccagaatatatcaattttattttaatttac 290
Query: 604 tgaaagcatggactttatcagaatttatataattcttcacagataanagaaaagctttgg 663
|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct: 289 tgaaagcatggactttatcagaatttatataattctccacagataaaagaaaagctttgg 230
Query: 664 attatgtgccatgaatttctgatta 688
||||||||| ||||||| |||||||
Sbjct: 229 attatgtgcaatgaattactgatta 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1088
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1078
Effective search space: 730884
Effective search space used: 730884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no483_l01.g1 MSMg01no483_l01.g1 CHROMAT_FILE:
MSMg01no483_l01.g1 PHD_FILE: MSMg01no483_l01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:59 2005
(635 letters)
>mm_chr15_15929662_15930697
Length = 1036
Score = 1199 bits (620), Expect = 0.0
Identities = 632/636 (99%), Gaps = 1/636 (0%)
Strand = Plus / Plus
Query: 1 catcgcaagatactgaaactctttaaagcaatactaactgatattatgagaaaattgttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catcgcaagatactgaaactctttaaagcaatactaactgatattatgagaaaattgttg 260
Query: 61 tatgacgctgagtcagatatttaagaattataaaatttagttttattgtattagagtcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatgacgctgagtcagatatttaagaattataaaatttagttttattgtattagagtcaa 320
Query: 121 gaagaatagacacatttgttttgtaagtttgatatagagagagtgcttagtttgttttgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaagaatagacacatttgttttgtaagtttgatatagagagagtgcttagtttgttttgc 380
Query: 181 tttattttttaacctcttggatatgtaactttagctctttctttaacacaacaagtaata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttattttttaacctcttggatatgtaactttagctctttctttaacacaacaagtaata 440
Query: 241 gtgcatcaataattaaaatacttgagaaatggatcttgcttcatcattagtttgagctta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgcatcaataattaaaatacttgagaaatggatcttgcttcatcattagtttgagctta 500
Query: 301 ttacttaccatgtattctttttttcaaagtatttagagaatgtgttctttttagtaaaac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttacttaccatgtattctttttttcaaagtatttagagaatgtgttctttttagtaaaac 560
Query: 361 tagataaaattaacattttatgcttaattgtatggcaccatctattaaatgacaaaatat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tagataaaattaacattttatgcttaattgtatggcaccatctattaaatgacaaaatat 620
Query: 421 tgattgtccatagatagtggttgagaaattttgaaa-ctttgccaatgtaaggacactag 479
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 621 tgattgtccatagatagtggttgagaaattttgaaaactttgccaatgtaaggacactag 680
Query: 480 ggaggatatcatttctttttatgttcatgattctgattttattgctaaagaatatttagt 539
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agagaatatcatttctttttatgttcatgattctgattttattgctaaagaatatttagt 740
Query: 540 tacaatatgtttttaaatacagcttttagatatcttatttttaaatgtcagagtaattta 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tacaatatgtttttaaatacagcttttagatatcttatttttaaatgtcagagtaattta 800
Query: 600 catgcatgtaagtatttttgaaacttttatttggtt 635
|||||||||||||||||||||| |||||||||||||
Sbjct: 801 catgcatgtaagtatttttgaatcttttatttggtt 836
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1036
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1026
Effective search space: 641250
Effective search space used: 641250
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
