GTTTTTTTACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCACCCCATGATAGCACTGCTTCTACCTATTGCCCTAT
CACTTACGGCCCATTTCTATGGGATCACTATACTTCCTTGCTTTTCTGGC
ATTTACATGACACACTTTGGTTAATGAAATTTGAATGGATGTATCTATAA
TTATATATGACAGAGAAACCTTCGGAATCATTTGTATGTAGACTTAGATT
TTTCAAAACTTACTTTAATTATGGTTCTTTAATGACTTCCCTCCTAGTCC
ACCACCTACCAGTTAGAGAAAAAGAAAGGTTAATAGGAAACAGGGATTGT
TGACCTGTTTAGAAATAGTTTTCTAGAACGATTCCAATCTTCACTGTCAG
GAGTTCATTCCATTAGAGAGACACCAAACAGGAATCAGCAGCAGTGGCTC
CATTCAAAAGCAACCACAACACTCCGCTGATTGCTGATTCACAGGAGTAC
TTGGAAGCGGCAGGAAGCAGCTGGGATACCAGAGTTCTTTAGTGCATTTC
TCTTTATGATGTCGTGACAAGTGATGATCAGAAAGGTGAACCAATGCAAG
AGTGTTGTCAGCAAATCCCAGCCTCAGCAAAGCCCAATGAAAATAGCAAA
AAGTTGCACTGTGAACAAATGGGAGACTTTGTCCACTGTCTGTTGGGTTC
TTCTTATACCCTT

NNNNCCTTTTNTTTTGGGNNNNNNNNCCTATGCAGTXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XAAAGTAAATGCCTGTGTCATAATTGCTGCTCCCAAAGTGAGAGAATAGA
CATGCATCTATTTTGTGNAGATAAACTGTGACTTAGCATGAAATCTTCTT
ACTACTACCCAACTCCCCTACAATCCACTATACTTCTTTAACAAACCCTT
TTTCTTTCTTTTTCTTTTTGGGGGGGAACCACCCCCCTTTAAAATTTTTT
AAGTTTTTTTCTCTAAAAAACCCCAAAAAAAAAATTTTTTTTTTAAAAAA
AAAAAAAAAAATTTTTCCCCCCCCAAAAAAAAAAATGTGGGGCGCCATTT
TTTTTGGCCCCCCCCTTTTTTTTTTTTTCCGGGGAAAAAAATCCCCCCTT
TTTTTAAAAAAAAATTTTTTTTTAAAAAAAAAAAAAAAATATTTTTTCTC
CCCCCCAAAATTTTTTTTCCCCCCCCCCCCCCCACCCCTTTTTTTTTTTT
TTATTAGGGGGCGGGAGAGAAGAAGGNNCCCCCCCCCCCCCCCCCAAAAA
AAAAAAAGAGGGGGGGGGGGTTTTTTTTTT

Query= MSMg01no485_b21.b1 MSMg01no485_b21.b1 CHROMAT_FILE:
MSMg01no485_b21.b1 PHD_FILE: MSMg01no485_b21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:56 2005
         (563 letters)



>mm_chr15_40342467_40343429
          Length = 963

 Score = 1052 bits (544), Expect = 0.0
 Identities = 556/560 (99%), Gaps = 2/560 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaccccatgatagca-ctgcttctacctattgccctatcacttacggcccatttc 63
           ||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaccccatgagag-atctgcttctacctattgccctatcacttacggcccatttc 263

                                                                       
Query: 64  tatgggatcactatacttccttgcttttctggcatttacatgacacactttggttaatga 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tatgggatcactatacttccttgcttttctggcatttacatgacacactttggttaatga 323

                                                                       
Query: 124 aatttgaatggatgtatctataattatatatgacagagaaaccttcggaatcatttgtat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aatttgaatggatgtatctataattatatatgacagagaaaccttcggaatcatttgtat 383

                                                                       
Query: 184 gtagacttagatttttcaaaacttactttaattatggttctttaatgacttccctcctag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gtagacttagatttttcaaaacttactttaattatggttctttaatgacttccctcctag 443

                                                                       
Query: 244 tccaccacctaccagttagagaaaaagaaaggttaataggaaacagggattgttgacctg 303
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 444 tccaccacctaccagttagagaaaaagaaaggttaataggaaacaggggttgttgacctg 503

                                                                       
Query: 304 tttagaaatagttttctagaacgattccaatcttcactgtcaggagttcattccattaga 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tttagaaatagttttctagaacgattccaatcttcactgtcaggagttcattccattaga 563

                                                                       
Query: 364 gagacaccaaacaggaatcagcagcagtggctccattcaaaagcaaccacaacactccgc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gagacaccaaacaggaatcagcagcagtggctccattcaaaagcaaccacaacactccgc 623

                                                                       
Query: 424 tgattgctgattcacaggagtacttggaagcggcaggaagcagctgggataccagagttc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tgattgctgattcacaggagtacttggaagcggcaggaagcagctgggataccagagttc 683

                                                                       
Query: 484 tttagtgcatttctctttatgatgtcgtgacaagtgatgatcagaaaggtgaaccaatgc 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tttagtgcatttctctttatgatgtcgtgacaagtgatgatcagaaaggtgaaccaatgc 743

                               
Query: 544 aagagtgttgtcagcaaatc 563
           ||||||||||||||||||||
Sbjct: 744 aagagtgttgtcagcaaatc 763


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space:   527009
Effective search space used:   527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)