Query= MSMg01no486_l17.b1 MSMg01no486_l17.b1 CHROMAT_FILE:
MSMg01no486_l17.b1 PHD_FILE: MSMg01no486_l17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:07 2005
(558 letters)
>mm_chr15_61937191_61938149
Length = 959
Score = 953 bits (493), Expect = 0.0
Identities = 543/567 (95%), Gaps = 19/567 (3%)
Strand = Plus / Plus
Query: 1 attcttcttcatttc-tagaactttaacggacttgatccagcaacgtaaactttccttca 59
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attcttcttcaggtcctagaactttaacggacttgatccagcaacgtaaactttccttca 260
Query: 60 gggcttgagatttgtctgttggcctctgtaaatgtttaactatgtctttgcccccttatt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggcttgagatttgtctgttggcctctgtaaatgtttaactatgtctttgcccccttatt 320
Query: 120 gctaactgaggttgtgctgagaaccacagctgtgtctttcctctgcatgtctcttccccc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctaactgaggttgtgctgagaaccacagctgtgtctttcctctgcatgtctcttccccc 380
Query: 180 tcttagagattaaatggactccaggtctgagagtcagctgctggactcccctggttgctt 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcttagagattaaatggactccaggtctgagagtcagctgctggactcccctggttgcta 440
Query: 240 ccctgggcctcaaattctgcaaccaaataataaccatttataattcatagctc--tccct 297
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 441 ccctgggcctcaaattctgcaaccaaataataaccatttataattcatagctcgatctct 500
Query: 298 c--tctccctccctccctccgtccctccctccctccctccttccctgtgtgtgtgtatgt 355
| |||||||| |||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 501 ccctctccctc--tccctc--tc--tccctccctccctccttccctgtgtgtgtgtatgt 554
Query: 356 gtcgatgaaacccc----attgtatatgtaggaaatgtctaaaattttaatcatagccat 411
|||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 gtcgatgaaa----tgagattgtatatgtaggaaatgtctaaaattttaatcatagccat 610
Query: 412 cttgggtaggtactcttcttaaggtaatgcaggatgctggatcgggcctctgattgggaa 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 cttgggtaggtactcttcttaaggtaatgcaggatgctggatcgggcctctgattgggaa 670
Query: 472 gacaggtgactgcctacctggcgtctgctgttctcttcctatagtgcatcacacttactg 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 gacaggtgactgcctacctggcgtctgctgttctcttcctatagtgcatcacacttactg 730
Query: 532 tctatgccctggtgccccccccccccc 558
||| |||||||||||||||||||||||
Sbjct: 731 tctgtgccctggtgccccccccccccc 757
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 959
Length adjustment: 10
Effective length of query: 548
Effective length of database: 949
Effective search space: 520052
Effective search space used: 520052
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no486_l17.g1 MSMg01no486_l17.g1 CHROMAT_FILE:
MSMg01no486_l17.g1 PHD_FILE: MSMg01no486_l17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:07 2005
(524 letters)
>mm_chr15_62090707_62091630
Length = 924
Score = 998 bits (516), Expect = 0.0
Identities = 522/524 (99%)
Strand = Plus / Minus
Query: 1 tattcataccccttaccaggagaagcatcatccgcactcctcagataggaaacaaagatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 tattcataccccttaccaggagaagcatcatccgcactcctcagataggaaacaaagatg 665
Query: 61 ctggtagggaacgtgccagggctcatgagaacagagttgggcctccagagaaaacgatga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 ctggtagggaacgtgccagggctcatgagaacagagttgggcctccagagaaaacgatga 605
Query: 121 gcatgagatcttagaaatccaggctacttctcagagcataaccaagactcagttccaacg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 gcatgagatcttagaaatccaggctacttctcagagcataaccaagactcagttccaacg 545
Query: 181 tggagactatgtttccacttccatccgaggtaagaggccctccctctattgtaggttgtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 tggagactatgtttccacttccatccgaggtaagaggccctccctctattgtaggttgtt 485
Query: 241 cctgatctgcttaggccagtgcttttgccaggaagaaagaagtagaggacacttccaacc 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 cctgagctgcttaggccagtgcttttgccaggaagaaagaagtagaggacacttccaacc 425
Query: 301 tgggagaagcccagaagacgctcttctctaaagagaacgtgtcccttgtatgaatgatgc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 tgggagaagcccagaagacgctcttctctaaagagaacgtgtcccttgtatgaatgatgc 365
Query: 361 agacatccagatgacagggagggctgcaagtccacttagctggagattcggaactgacag 420
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 agacatccagaggacagggagggctgcaagtccacttagctggagattcggaactgacag 305
Query: 421 gcatagccttgcctgaaggccaggcctttatccatcttaagatggcttggacctgtgaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 gcatagccttgcctgaaggccaggcctttatccatcttaagatggcttggacctgtgaaa 245
Query: 481 ggaattctgataggaagaatatagagatggctgcctggctgcct 524
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 ggaattctgataggaagaatatagagatggctgcctggctgcct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 924
Length adjustment: 10
Effective length of query: 514
Effective length of database: 914
Effective search space: 469796
Effective search space used: 469796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
