BAC Information

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BAC

Clone NameMSMg01-488N18
Chromosome15 (Build37)
Map Location 75,022,139 - 75,022,843
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040984, Bai1, 1700016M24Rik, Arc, Jrk, 4933427E11Rik, Psca, 4930572J05Rik, Slurp1, Lypd2, 2300005B03Rik, Lynx1, Ly6d, D730001G18Rik, Ly6k, Gml, Hemt1, Cyp11b1, Cyp11b2, 2010109I03Rik, LOC625653, Ly6e, Ly6i, LOC666240, LOC100041528, Ly6a, Ly6c, LOC546642, EG625737, LOC100041546, I830127L07Rik, LOC100041070, LOC546644
Downstream geneLOC100041087, BC025446, LOC100041092, Ly6f, LOC100041652, LOC100041107, 9030619P08Rik, Ly6h, Gpihbp1, Zfp41, 2810039B14Rik, Top1mt, Rhpn1, Mafa, Zc3h3, LOC672572, Gsdmdc1, Naprt1, Eef1d, Tigd5, Pycrl, Tsta3, Zfp623, Eif2s3x-ps1, Zfp707, 2410075B13Rik, Mapk15, AA409316, K230010J24Rik, Scrib, 2410104I19Rik, Nrbp2, Eppk1, BC024139, Plec1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-488N18.T7 (MSMg01no488_n18.b1)MSMg01-488N18.TJ (MSMg01no488_n18.g1)
ACCAG567482AG567483
length742767
length of high quality
(start - end)		683 (36 - 718)690 (75 - 764)
definitionCHROMAT_FILE: MSMg01no488_n18.b1 PHD_FILE: MSMg01no488_n18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:11:53 2005CHROMAT_FILE: MSMg01no488_n18.g1 PHD_FILE: MSMg01no488_n18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:11:54 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTTA
TTCCCTGGAAAGAATTTCCCAGGCATGGATGGGAGGTCCTCTCAGATGGG
ATGGCAGCTGAAAGTCTATCACCAGGCTCTAATGGCTTGTCTCCACGGGG
CTGAGGTGTGCTCCATCAATCTGACCAAGGTAAAAGGGGTACAGAAGCTA
GAAGGATTGTAGGACAAGTCGGTAAGAGAGTTGTGTAGGTTGATAAGAAA
GTACAGAGGAGGAGGAAGGAAGGAAGGAAGGAAGGAAGGAAAGTGCTGCT
AAGAAGTGAGCTAAGAAGTGCAGGAGGAGAAAGACAAAGAGGATGAGGAA
GACAGATGTGTACAGATAGAGGTTTGTAAAGATGAAAGAAAGATTAAACC
CATAGAGAATCTAAGCAAGTCGATCTTGAGGGTAAGAAGAGCAAAGCTTC
AGTAGACACAATAAGAAACAGACTCAGGAGAGATAGATGACAGTGGCAAA
TGGAGAGATTAACAGTGAGGAGGGGTAGAAATAGTGATGAAGGGAATTAG
TGAGAGGTCTAAGTTGAGAGACAGGCAAGAGGAAGGGTTGCTATACAAAA
ATAGGAAGCATGATGGGCAGAAGGACAAAGCACAAATGGTGAGACACACA
GACAGGCTGACAAAGACAGAGAACAGTGTCAGAATCAGAGATGTGCAGCG
AGACAGAGGATAAACCAGGGCAGAGATGAACTATGGGAGTGG

GCAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATCTTGGTAGATTTTTCCTTTGATGA
GTATTAAGAGTACTTCCTTATCCTTTTTGATAACTTTCGGTTGAAAGTTG
CTTTTATTTAATATTTGAATGGTGTTTGAAGACCTGCCCATCTGCTGCTG
AGTTGGAAGCAGACACAATTAACCCTAGCCAGTGTATTGTGGGCAGCACA
AGGCTGTGTTTGTCTAGCAGCCACATGGGTCAGGTCTCACTAGTCCCTAA
GGCCTGTGCTATGATCTGTCTGTCTGAGAGAAAACAAAAACACATAACAG
ATATTAAAGCTGTCTCCAGGTATCAAGACCGGAGGAAGTCGAGTAACTTT
CGACTTCTAAATGCACTTCTTTCTCAGAACCTAGGAAATGGATCTATGGA
GGAACCACAAGGCATGTACCCTAGAGAAGGAGTGTGTGTGTGTGTGTGTG
TGTGTATGCCAGAGCAGCACCTCACAGACACATAGGCAGCTCCTCACCAT
GAGGAGTTCTGATGCTTTCCCTTGTTTTAATTGCATCTACCCCACCCAGC
TGCATCACAGTTATTCAAGTGTACAGTGCACACTTAAAAATATATTGATT
CTTAGTGAATTTCCCAACATGCACTTTAATTCCATTCATCTCCCTACCCC
TCCATAGGTAGCCTATATCTTTGCAACCTCCCTCTNGAAACATAAAGATA
AAATAAAATATAAAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no488_n18.g1 MSMg01no488_n18.g1 CHROMAT_FILE:
MSMg01no488_n18.g1 PHD_FILE: MSMg01no488_n18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:54 2005
         (690 letters)



>mm_chr15_75021954_75023043
          Length = 1090

 Score = 1237 bits (640), Expect = 0.0
 Identities = 682/706 (96%), Gaps = 18/706 (2%)
 Strand = Plus / Plus

                                                                       
Query: 2   tcttggtagatttttcctttgatgagtattaagagtacttccttatcctttttgataact 61
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 186 tcttggtagatttttcctttgatgagtattaagagtacttccttatccttttcgataact 245

                                                                       
Query: 62  ttcggttgaaagttgcttttatttaatatttgaatggtgtttgaagacctgcccatctgc 121
           |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 246 ttcggttgaaagttgcttttatttaatatttgaatggtgtgtgaagacctgcccgtctgc 305

                                                                       
Query: 122 tgctgagttggaagcagacacaattaaccctagccagtgtattgtgggcagcacaaggct 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tgctgagttggaagcagacacaattaaccctagccagtgtattgtgggcagcacaaggct 365

                                                                       
Query: 182 gtgtttgtctagcagccacatgggtcaggtctcactagtccctaaggcctgtgctatgat 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 gtgtttgtctagcagccacatgggtcaggtctcactagtccctaaggcctgtgctatgat 425

                                                                       
Query: 242 ctgtctgtctgagagaaaacaaaaacacataacagatattaaagctgtctccaggtatca 301
           ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ctgactgtctgagagaaaactaaaacacataacagatattaaagctgtctccaggtatca 485

                                                                       
Query: 302 agaccggaggaagtcgagtaactttcgacttctaaatgcacttctttctcagaacctagg 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 agaccggaggaagtcgagtaactttcgacttctaaatgcacttctttctcagaacctagg 545

                                                                       
Query: 362 aaatggatctatggaggaaccacaaggcatgtaccctagagaaggagtgtgtgtgtgtgt 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 aaatggatctatggaggaaccacaaggcatgtaccctagagaaggagtgtgtgtgtgtgt 605

                                                                       
Query: 422 gtgtgtgtgt----------------atgccagagcagcacctcacagacacataggcag 465
           ||||||||||                ||||||||||||||||||||||||||||||||||
Sbjct: 606 gtgtgtgtgtgtgtgtgtgtgtgtgtatgccagagcagcacctcacagacacataggcag 665

                                                                       
Query: 466 ctcctcaccatgaggagttctgatgctttcccttgttttaattgcatctaccccacccag 525
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 ctcctcaccatgaggagttctgatgctttcccttgttttaattgcatctaccccacccag 725

                                                                       
Query: 526 ctgcatcacagttattcaagtgtacagtgcacacttaaaaatatattgattcttagtgaa 585
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ctgcatcacagttattcaagtgtacagtgcacacttaaaaatatattgattcttagtgaa 785

                                                                       
Query: 586 tttcccaacatgcactttaattccattcatctccctacccctccataggtagcctatatc 645
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tttcccaacatgcactttaattccattcatctccctacccctccataggtagcctatatc 845

                                                         
Query: 646 tttgcaacctccctctngaaa-cataaagataaaataaaatataaa 690
            ||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 846 cttgcaacctccctct-gaaaacataaagataaaataaaatataaa 890


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1090
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1080
Effective search space:   734400
Effective search space used:   734400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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