BAC Information

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BAC

Clone NameMSMg01-489A10
Chromosome15 (Build37)
Map Location 66,477,354 - 66,650,648
singlet/doubletdoublet
Overlap geneTg, Sla
Upstream geneC920006C10Rik, Oc90, F930104E18Rik, LOC100040835, Kcnq3, Lrrc6, LOC100040860, Tmem71, LOC100040881, Phf20l1
Downstream geneWisp1, Ndrg1, LOC100040667, St3gal1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-489A10.T7 (MSMg01no489_a10.b1)MSMg01-489A10.TJ (MSMg01no489_a10.g1)
ACCAG567609AG567610
length728733
length of high quality
(start - end)		404 (325 - 728)570 (79 - 648)
definitionCHROMAT_FILE: MSMg01no489_a10.b1 PHD_FILE: MSMg01no489_a10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:12:06 2005CHROMAT_FILE: MSMg01no489_a10.g1 PHD_FILE: MSMg01no489_a10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:12:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,650,245 - 66,650,648)(66,477,354 - 66,477,923)
sequence
GGGGAATCTATAATTGCGGCGCGAAAAGAATCCGATTTTCAAATCAGGGG
NGGAANNCNNGTTTTCCAAAATAAGACCACAGGNATGAAAAGATGTAATC
TATAAAAATTCTTCATATAAATATCTACTATTGATATTCCTATTGATGCT
CAAACTATAATTTTAAAATGGTAGACTATTCTCTAGTCCAGTGATTCTTA
ACCTATATGTTGTGATACATTGAGAGCCGAATGATGCTTTCATAGGGCTT
GTCTAAGACCAAGACTAAGTCTGTGCTAAGGCTAAGGACTGATATTTACA
TTATGATTCATAACTTNATCNATATTACAGTTATGAGATATCAACAAAAA
TAATTTTATGGTTGGGGGCCACCACAGCATGAGGAACTGTGTAAAATGGT
CACAAGTGTTAGGTTGAGAACCGCTGCTCTAGACTAACAGATCAGCATTA
GAGTTTCATCTCAGCCAAGGCATTTTCCACAGCCTCCCCTTGCTGGTGCA
ATTAGTCATGGATCAGTGCATGCTGAGCTGACCCTGACTGATAGTTTTAC
ACCTAACCAGCTGGTTCTGACTGCGTGTCAGTGACTTAAGTAACATCAAA
GTCAACTTCAAGCTTGCCTTTCTTCTGACAATAAAATCTTATCATGAGGA
AGTGGAGCATCCAGCCATGAGGAGGCATCCTGGGAGAGCATGAGGTGGGG
TTTCAGTGAGTGTGATAACAATCTTGCT

NNCCCCTATGAAGTGGGAGGCCTGGNGGNCGCCTGTTTTCAAAATTTAGG
TNGAACTATAGAAGTTTCCAAAAAATTCTGTTACCGAGTAATAACTTGCT
ATACGGAAACAGACACAGATTGGTAATCTCAGATTTCCTTGTAATTAATT
TACTAGCAGTATGATTCCCTGAGCTTTGGTTTACTTGTCTATAAATGATG
ACATACCAACTTGGAACTTTGCTTTGAGACTTAAATTATCAAGAAGCATA
ATTTATGAACTCGATATCACCTATCACTGAGTGTCATCTATGTGCAGGCC
ATGAAATTAGCATGGTTATAGTTGTATAGAGGATAAGATCATGTTCCATA
GGCTAATGGAGACAGTAACATTTTCTAGTGAGAGCCCAACCAAAGAGACC
TTTCTTTAAAGGAAGATAATTATACTTGAATGTGGTGGAGCAGGGAGAAT
AGATATATATTCGTTGAAACAGTGTTCTCTTAAATTTGACTAGAACATCC
AGAAAAATTTAAGACTTTGAAATTCCTAGTCTTTGTTCTCTCTAAACTAG
AGCCCAAGGAAAGACTTCTGAGTGTACTTAGTTCATTAGAAACAAAATCG
AACAACTCAGTAGCAGGAGGGAAGTGAGGGAACGGAAGAGGGGAGGAGAA
AGCAAATAAGCAGAAGGATTGCTGTGAGCAATGGGGTTTGGATTCTGCCT
TTTTTAATCCTACATACAGTATGTAATTTCCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no489_a10.b1 MSMg01no489_a10.b1 CHROMAT_FILE:
MSMg01no489_a10.b1 PHD_FILE: MSMg01no489_a10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:06 2005
         (404 letters)



>mm_chr15_66649943_66650746
          Length = 804

 Score =  774 bits (400), Expect = 0.0
 Identities = 403/404 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttacagttatgagatatcaacaaaaataattttatggttgggggccaccacagcatgagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 ttacagttatgagatatcaacaaaaataattttatggttgggggccaccacagcatgagg 647

                                                                       
Query: 61  aactgtgtaaaatggtcacaagtgttaggttgagaaccgctgctctagactaacagatca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 aactgtgtaaaatggtcacaagtgttaggttgagaaccgctgctctagactaacagatca 587

                                                                       
Query: 121 gcattagagtttcatctcagccaaggcattttccacagcctccccttgctggtgcaatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 gcattagagtttcatctcagccaaggcattttccacagcctccccttgctggtgcaatta 527

                                                                       
Query: 181 gtcatggatcagtgcatgctgagctgaccctgactgatagttttacacctaaccagctgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 gtcatggatcagtgcatgctgagctgaccctgactgatagttttacacctaaccagctgg 467

                                                                       
Query: 241 ttctgactgcgtgtcagtgacttaagtaacatcaaagtcaacttcaagcttgcctttctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 466 ttctgactgcgtgtcagtgacttaagtaacatcaaagtcaacttcaagcttgcttttctt 407

                                                                       
Query: 301 ctgacaataaaatcttatcatgaggaagtggagcatccagccatgaggaggcatcctggg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 ctgacaataaaatcttatcatgaggaagtggagcatccagccatgaggaggcatcctggg 347

                                                       
Query: 361 agagcatgaggtggggtttcagtgagtgtgataacaatcttgct 404
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 agagcatgaggtggggtttcagtgagtgtgataacaatcttgct 303


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 804
Length adjustment: 9
Effective length of query: 395
Effective length of database: 795
Effective search space:   314025
Effective search space used:   314025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no489_a10.g1 MSMg01no489_a10.g1 CHROMAT_FILE:
MSMg01no489_a10.g1 PHD_FILE: MSMg01no489_a10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:06 2005
         (570 letters)



>mm_chr15_66477154_66478123
          Length = 970

 Score = 1064 bits (550), Expect = 0.0
 Identities = 565/570 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgttaccgagtaataacttgctatacggaaacagacacagattggtaatctcagatttcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgttaccgagtaataacttgctatacggaaacagacacagattggtaatctcagatttcc 260

                                                                       
Query: 61  ttgtaattaatttactagcagtatgattccctgagctttggtttacttgtctataaatga 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 ttgtaattaatttactagcagtatgataccctgagctttggtttacttgtctataaatga 320

                                                                       
Query: 121 tgacataccaacttggaactttgctttgagacttaaattatcaagaagcataatttatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||
Sbjct: 321 tgacataccaacttggaactttgctttgagacttaaattatcaagaagcataatacatga 380

                                                                       
Query: 181 actcgatatcacctatcactgagtgtcatctatgtgcaggccatgaaattagcatggtta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actcgatatcacctatcactgagtgtcatctatgtgcaggccatgaaattagcatggtta 440

                                                                       
Query: 241 tagttgtatagaggataagatcatgttccataggctaatggagacagtaacattttctag 300
            ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagttggatagaggataagatcatgttccataggctaatggagacagtaacattttctag 500

                                                                       
Query: 301 tgagagcccaaccaaagagacctttctttaaaggaagataattatacttgaatgtggtgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgagagcccaaccaaagagacctttctttaaaggaagataattatacttgaatgtggtgg 560

                                                                       
Query: 361 agcagggagaatagatatatattcgttgaaacagtgttctcttaaatttgactagaacat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agcagggagaatagatatatattcgttgaaacagtgttctcttaaatttgactagaacat 620

                                                                       
Query: 421 ccagaaaaatttaagactttgaaattcctagtctttgttctctctaaactagagcccaag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccagaaaaatttaagactttgaaattcctagtctttgttctctctaaactagagcccaag 680

                                                                       
Query: 481 gaaagacttctgagtgtacttagttcattagaaacaaaatcgaacaactcagtagcagga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gaaagacttctgagtgtacttagttcattagaaacaaaatcgaacaactcagtagcagga 740

                                         
Query: 541 gggaagtgagggaacggaagaggggaggag 570
           ||||||||||||||||||||||||||||||
Sbjct: 741 gggaagtgagggaacggaagaggggaggag 770


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space:   537600
Effective search space used:   537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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