BAC Information

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BAC

Clone NameMSMg01-490F22
Chromosome15 (Build37)
Map Location 97,934,316 - 97,934,908
singlet/doubletsinglet
Overlap genenone
Upstream geneAmigo2, BC038822, LOC100043354, LOC100042774, D15Ertd682e, Pp11r, Rapgef3, 4930570C03Rik, Hdac7a, Vdr, Tmem106c, Col2a1, Senp1
Downstream genePfkm, Asb8, AI836003, Olfr288, LOC634104, EG629524, H1fnt, Zfp641, Olfr285, Olfr284, Olfr283, 1700031M16Rik, LOC100042818, Olfr282, LOC629549, Olfr281, Olfr240-ps1, GA_x5J8B7W76D0-7895713-7896429, Lalba, Olfr234, Olfr278-ps1, 2310037I24Rik, LOC100043418, Ccnt1, 4930415O20Rik, Adcy6, Cacnb3, Ddx23, Rnd1, Ccdc65, Fkbp11, Arf3, 5830427D03Rik, Wnt10b, Wnt1, Ddn, Prkag1, Mll2, Rhebl1, Dhh, Lmbr1l, Tuba1b, Tuba1a, EG668092, Tuba1c, Prph1, Troap, C1ql4, 2810451A06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-490F22.T7 (MSMg01no490_f22.b1)MSMg01-490F22.TJ (MSMg01no490_f22.g1)
ACCAG568621AG568622
length768758
length of high quality
(start - end)		593 (73 - 665)584 (73 - 656)
definitionCHROMAT_FILE: MSMg01no490_f22.b1 PHD_FILE: MSMg01no490_f22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:13:56 2005CHROMAT_FILE: MSMg01no490_f22.g1 PHD_FILE: MSMg01no490_f22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:13:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCTATTTCCTTACACTTAGTCTCTCAGAATGTCTTCTCTT
GATTTTTTTTTTAACTCTGTTGTCTACTTGTACATGATACCCCAGTAGCT
AGGTGAATCCAGTAGAACTCTGAGAAGCTTAACAGGATCTTCTGAATGTC
TTCTTCCACACTGAGGATCAACATAAAGAACAGCCTTGGGGTGAGGGGGA
GATGAAATGACTCCGAGAATAAAGCCCTTGCCACGGATATATGAGCCAGA
GTTCAGATGCCCAGCAAACACTGTAAAGCTGAGTGTAGCCCCGGAGTTTG
ATAGGAGGAGACTGGATACCTAAGGCAAGCTGGCTAGCAAGATGGGCTGA
ATTAGCAAACTGGGTACAGTGAAAGACCCTTCCTCGATAAAGTGGAAAGG
AACTGAGGAAGATATCTGATGTCAACCTCTGGCCTCTACATGAACATGCA
CACACGACTACCTGCATGTGAACATCCATCCGTCCTATATGCATACACAT
GTGAAAGAAAAAGAATAGGCCTTTAATTTCTGATTTCTGGGGCATGGCAC
ACAAAGTAAGCTATCAGTCATTTGTCCATTTTTTGTACAGGTTATCTTCC
CCTGGATGCTAAAGACAGGAAGACCACACTGACTGGCATTGTGAGGTAGA
GACTATATCATCATGACCCGGAGCATCTCCCTGACCCCCTTTCTCCCCGC
TAGTGGCCCCCCACCTAA

NACGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTCGCAGAAATCTCACCTGAGGAATACCGAATGGTTGAGA
AGCACCTGAAAAAATGTTGAACATCCTTAATCATCAGGGAAATGCAAATC
AAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATAAA
AAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACAC
TGCTTCATTGTTAGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCA
GTTTGGCAGTTCCTCAGAAAATTTTATTAATTGGACTATCAGAGGATCCA
GCAATACCTCTCCTGGGCATATATCCAGAAGATGTTCCAACTGGTAAGAA
GGACACATGCTCCACTATGTTCATAGCAGCCTTTTTTATAATAGCCAGAA
GCTGGAAAGAACTCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATG
TGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAGGAATGAATT
TATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGTG
AGGTAACACAATCACAAAGGAACTCACACAATATGTACTCACTGATAAGT
GGATATTAGCCCAAAAACTTATGATACCCCAGATATAAGATANCATTTGT
TAAATGCACGAAACTCAAGAGGAACGAAGACAAAGTGTGGACACTGTGCC
CCTTCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no490_f22.b1 MSMg01no490_f22.b1 CHROMAT_FILE:
MSMg01no490_f22.b1 PHD_FILE: MSMg01no490_f22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:56 2005
         (593 letters)



>mm_chr15_97934116_97935107
          Length = 992

 Score = 1118 bits (578), Expect = 0.0
 Identities = 590/594 (99%), Gaps = 2/594 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacttagtctctcagaatgtcttctcttgattttttttttaactctgttgtctacttgta 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacttagtctctcagaatatcttctcttgattttttttttaactctgttgtctacttgta 260

                                                                       
Query: 61  catgataccccagtagctaggtgaatccagtagaactctgagaagcttaacaggatcttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catgataccccagtagctaggtgaatccagtagaactctgagaagcttaacaggatcttc 320

                                                                       
Query: 121 tgaatgtcttcttccacactgaggatcaacataaagaacagccttggggtgagggggaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaatgtcttcttccacactgaggatcaacataaagaacagccttggggtgagggggaga 380

                                                                       
Query: 181 tgaaatgactccgagaataaagcccttgccacggatatatgagccagagttcagatgccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaaatgactccgagaataaagcccttgccacggatatatgagccagagttcagatgccc 440

                                                                       
Query: 241 agcaaacactgtaaagctgagtgtagccccggagtttgataggaggagactggataccta 300
           ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcaaacacgg-aaagctgagtgtagccccggagtttgataggaggagactggataccta 499

                                                                       
Query: 301 aggcaagctggctagcaagatgggctgaattagcaaactgggtacagtgaaagacccttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aggcaagctggctagcaagatgggctgaattagcaaactgggtacagtgaaagacccttc 559

                                                                       
Query: 361 ctcgataaagtggaaaggaactgaggaagatatctgatgtcaacctctggcctctacatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ctcgataaagtggaaaggaactgaggaagatatctgatgtcaacctctggcctctacatg 619

                                                                       
Query: 421 aacatgcacacacgactacctgcatgtgaacatccatccgtcctatatgcatacacatgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aacatgcacacacgactacctgcatgtgaacatccatccgtcctatatgcatacacatgt 679

                                                                       
Query: 481 gaaagaaaaagaataggcctttaatttctgatttctggggcatggcacacaaagtaagct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gaaagaaaaagaataggcctttaatttctgatttctggggcatggcacacaaagtaagct 739

                                                                 
Query: 541 atcagtcatttgtccatttt-ttgtacaggttatcttcccctggatgctaaaga 593
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 740 atcagtcatttgtccattttgttgtacaggttatcttcccctggatgctaaaga 793


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 992
Length adjustment: 10
Effective length of query: 583
Effective length of database: 982
Effective search space:   572506
Effective search space used:   572506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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