BAC Information

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BAC

Clone NameMSMg01-492J06
Chromosome15 (Build37)
Map Location 69,337,993 - 69,501,809
singlet/doubletdoublet
Overlap genenone
Upstream geneEG665945, EG633752, Khdrbs3
Downstream geneLOC383050
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-492J06.T7 (MSMg01no492_j06.b1)MSMg01-492J06.TJ (MSMg01no492_j06.g1)
ACCAG570301AG570302
length720722
length of high quality
(start - end)
247 (68 - 314)534 (73 - 606)
definitionCHROMAT_FILE: MSMg01no492_j06.b1 PHD_FILE: MSMg01no492_j06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:51 2005CHROMAT_FILE: MSMg01no492_j06.g1 PHD_FILE: MSMg01no492_j06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,337,993 - 69,338,239)(69,501,275 - 69,501,809)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGACAATCCGCGGAA
TTCCTAGAGTATCCGAGCTGCCTCACATTCACTTTTACTGAGCACCATGC
CAGTTGAATACCAGGCTCTTAAAGGCCATAAGAGCTCTTGGGACAATGTA
ATAGAAGGAGTATCTTGCACATAACTGTAAAGATTACTCTTGGTTGTTGA
TTGAGATCTAGAATTACTGGGAAATGGATGTTTATGTATGCATGTAGGGG
ACTAAGTTTCTTACCTTAACAGAGGTGGGAATACCAGCCCACTATGAGTA
GATGCAGTTGGTGGGTATTTATCGTGGGTCATAAGTAAGGGAAAAGGAAA
CTGAGCAGCAGAATTCATTGCTCTTTTTTGTCCTGATTGAAGTTGCAATG
CGACCAGTAGCCTCAAACTCCTGTTCTCCTCCCTTCATTCCTATAATGCT
CGGGAACCATGAACTGTGAGTCACAATAAAGCCAATCTTCCTTAATTTGC
TTTTGCCATTAGTATTTTATCATACGAGCATGAGGAGAAGCCAGGACAGC
ATCTCTGTGACCACAGATCATGTGACTCAGTGATTATTTCAGCATCTGTA
CAGCTAGGCTTCTCATACAACCTGCAGACAACACTATGAGTTATGTTTTT
CGCTCAAAATCATGGTTCTTCTATATTCTCTGTGCCTCCTAATATGATAC
CTCATGCGTTCAACTGCTCN
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTACCATTAGTGATGAGAAATGTGTACA
CAATCATTAAATGTCATGGGACAAGAATCATCCAGGTAGAAAGCTAATTC
AATCAAAGACAACCGATTTGAAAACCATCCTGATATAACTTACTGTTTGC
TTATCTCATGACATGTTGCTGGTATTTTCTTTGTAGTACATGGCATTGAA
CTAAGGGCAGTACATATGTTAGCTAGCATTCTACCAGTGAACTACAACAG
TAGTCCCACCAGCTATTTCTTCTGTTATTGTTTCCACCTTCTTGCTTTCA
AACTGAAGCATGATGCTTCATGTTTCAAAAGTACAGAAGAAATGAATATA
ACAAGAGTCATTTCTTGATATTTAGAAAAAAAAACATGGAAAGAGACAAA
CTGGGGAAGAAAAGAAGGGTGAAAAGTCAGGACAAATTAAGAGGCCTCAG
AAACGGGAAGAAAAAAGTGACATAGTTATATTCTAATCTCAAAAATAAAA
TTCTAAAGAGGCCATTGGAGATTTTTTTCTCCAAATGTTGAAATTATTTG
AATCATACTGAAAGCCCTGGATTTTTAGAGAAAACACAACACTTCTGTAA
GGACCTTGCAACTTCTGCTAATTTTTTGATCACTCCGGAGAAACATGCTT
TTTTTCCCATCCACAAGTTTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no492_j06.b1 MSMg01no492_j06.b1 CHROMAT_FILE:
MSMg01no492_j06.b1 PHD_FILE: MSMg01no492_j06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:51 2005
         (247 letters)



>mm_chr15_69337793_69338439
          Length = 647

 Score =  462 bits (239), Expect = e-135
 Identities = 245/247 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgcctcacattcacttttactgagcaccatgccagttgaataccaggctcttaaaggcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 ctgcctcacattcacttttactgagcaccatgccagttgaataccaggctcttcaaggcc 260

                                                                       
Query: 61  ataagagctcttgggacaatgtaatagaaggagtatcttgcacataactgtaaagattac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataagagctcttgggacaatgtaatagaaggagtatcttgcacataactgtaaagattac 320

                                                                       
Query: 121 tcttggttgttgattgagatctagaattactgggaaatggatgtttatgtatgcatgtag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcttggttgttgattgagatctagaattactgggaaatggatgtttatgtatgcatgtag 380

                                                                       
Query: 181 gggactaagtttcttaccttaacagaggtgggaataccagcccactatgagtagatgcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 gggactaagtttcttaccttaacagaggtgggaataccagcccactatgggtagatgcag 440

                  
Query: 241 ttggtgg 247
           |||||||
Sbjct: 441 ttggtgg 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no492_j06.g1 MSMg01no492_j06.g1 CHROMAT_FILE:
MSMg01no492_j06.g1 PHD_FILE: MSMg01no492_j06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:51 2005
         (534 letters)



>mm_chr15_69501075_69502009
          Length = 935

 Score =  973 bits (503), Expect = 0.0
 Identities = 527/535 (98%), Gaps = 1/535 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctaccattagtgatgagaaatgtgtacacaatcattaaatgtcatgggacaagaatcatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 ctaccattagtgatgagaaatgtgtacacaatcattaaatgtcatgggacaagaatcatc 676

                                                                       
Query: 61  caggtagaaagctaattcaatcaaagacaaccgatttgaaaaccatcctgatataactta 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 675 caggtagaaagctaattcaatcaaagacaaccgatttgaaagccatcctgatataactta 616

                                                                       
Query: 121 ctgtttgcttatctcatgacatgttgctggtattttctttgtagtacatggcattgaact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 ctgtttgcttatctcatgacatgttgctggtattttctttgtagtacatggcattgaact 556

                                                                       
Query: 181 aagggcagtacatatgttagctagcattctaccagtgaactacaacagtagtcccaccag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 aagggcagtacatatgttagctagcattctaccagtgaactacaacagtagtcccaccag 496

                                                                       
Query: 241 ctatttcttctgttattgtttccaccttcttgctttcaaactgaagcatgatgcttcatg 300
           ||| | || ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 495 ctactactactgttattgtttccaccttcttgttttcaaactgaagcatgatgcttcatg 436

                                                                       
Query: 301 tttcaaaagtacagaagaaatgaatataacaagagtcatttcttgatatttag-aaaaaa 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 435 tttcaaaagtacagaagaaatgaatataacaagagtcatttcttgatatttagaaaaaaa 376

                                                                       
Query: 360 aaacatggaaagagacaaactggggaagaaaagaagggtgaaaagtcaggacaaattaag 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 aaacatggaaagagacaaactggggaagaaaagaagggtgaaaagtcaggacaaattaag 316

                                                                       
Query: 420 aggcctcagaaacgggaagaaaaaagtgacatagttatattctaatctcaaaaataaaat 479
           |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 315 aggcctcagaaatgggaagaaagaagtgacatagttatattctaatctcaaaaataaaat 256

                                                                  
Query: 480 tctaaagaggccattggagatttttttctccaaatgttgaaattatttgaatcat 534
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 tctaaagaggccattggagatttttttctccaaatgttgaaattatttgaatcat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 935
Length adjustment: 10
Effective length of query: 524
Effective length of database: 925
Effective search space:   484700
Effective search space used:   484700
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)