BAC Information

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BAC

Clone NameMSMg01-493C11
Chromosome15 (Build37)
Map Location 94,536,061 - 94,688,180
singlet/doubletdoublet
Overlap geneTmem117
Upstream geneLOC100042627, LOC100042631, D630010B17Rik, Adamts20, Pus7l, Irak4, Twf1
Downstream geneLOC100043315, Nell2, Dbx2, LOC100042684, LOC667849, EG629300, LOC667864, Tmem16f, LOC100043329
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-493C11.T7 (MSMg01no493_c11.b1)MSMg01-493C11.TJ (MSMg01no493_c11.g1)
ACCAG570740AG570741
length715735
length of high quality
(start - end)		640 (76 - 715)628 (72 - 699)
definitionCHROMAT_FILE: MSMg01no493_c11.b1 PHD_FILE: MSMg01no493_c11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:17:35 2005CHROMAT_FILE: MSMg01no493_c11.g1 PHD_FILE: MSMg01no493_c11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:17:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,536,061 - 94,536,700)(94,687,553 - 94,688,180)
sequence
GAGGACGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGGATC
CGCGGAATTCAAGGACATTGCCGATGTTAATTTTTAAGAGTTGCAGCCTA
TAATTTCTAATTCTATTGCCAATTTTAGCACCTCAGACATTTCAGAAGAC
CTTTCTTTTAAATCTAAAAGTGCAATTTTCCTATGATTGCAAATAGAACA
TGTCTATAAAATAGAGATAACATTGATTTGATCAAAATTATAGAGTATGA
TTATACACACACACACATATATGAGAAAAATTAAGTAGACAGCCTGCTGG
GAAGCACTATGAATTTTCCATTCCTACAACGCATAGCTACAGCTGTGTCT
TTAATGAAGGAGAAGTAATATCAGTGCCTTAGCAGCATTCTTTGCTTTTG
GGACAACCATTTCCTGTGGAACAACAGAGAGCAATTTAAGTTATTAAAGC
TGAATGATTTTAAAGGTTTAATGGAGGTGGTCAATGTATAAAGGTTAAAA
AAAATACCATGTTTGGACTTTAATAAAATGTAAGACTTAATACTGTACTC
CTTCTTTTATTGAGAATAATTTGTGTTAATATGTGTTCATTTAGGACATG
CATATTTTGCTATATGTTTCTCTTGATGTTTAGATCAGAAGTCAGCATTA
TGTACCACATCTGGAGAGCACTATCATTTTTATATGTTTCTAACGGTTTT
GTCACTTTTTTCCCT

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTCCCGAAAATCATTAAGGGAGACAGGACAAACTCTCCTTTG
ACCAAACTGTAGCAAGATGTATACATCAACGAACTAACGCATCATCTAAT
TTTGCTACTTCGCCTTATCCCCTTGGCATCCTGGAACGCCAGCCTCATTC
CAGGTCTGTGGTTTGCCAGGAAACTGCTCCCTGCTCCTGACACACTTGCT
TTTATATTTTCAACAATCAACCTCTTTGCCTTTTTAAATGGAAATAATGT
CCTCATTCTATTTCCCTTTTCTGAGCCGCCACTGAAGCGGAGCCCGGCTC
TGCCCTCTTCTAAAACAGTAGTCTCTTCCCAGTTAATAGAGTTATTTTTT
AAAATTGTTAATTAAATGGCAATTGTTAGAAACAAATGCGTCTCATTACT
CAGTGAGAAAGGAATTAGCTTCTACATTAACCTGCATTCTTTTCATGAAC
CCATTTTCACCATTTTTTTTCTTTTTTCTTGAGGTTTTAAACCATAAGCA
TGCAAGAGTTCACTACTAAAATATGAAAAACATTTTAAAATTGGAAGGAA
CAGATACCCAACAGTCTATCACTCAGTACAACGATCCCAATTTCCTTCCA
ATACATTTCTTGTACAGATTTTTAAGTCAAGAAATCAAATGTATTAAATT
TGTATTAAAATGTGCCCAAAGGTTAAAGCAGATGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no493_c11.b1 MSMg01no493_c11.b1 CHROMAT_FILE:
MSMg01no493_c11.b1 PHD_FILE: MSMg01no493_c11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:35 2005
         (640 letters)



>mm_chr15_94535861_94536900
          Length = 1040

 Score = 1199 bits (620), Expect = 0.0
 Identities = 635/640 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttaatttttaagagttgcagcctataatttctaattctattgccaattttagcacctca 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 gttaatttttaagagttgcagcctataatttctaattctattgccaatttcagcacctca 260

                                                                       
Query: 61  gacatttcagaagacctttcttttaaatctaaaagtgcaattttcctatgattgcaaata 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 gacatttcagaagacctttcttttaaatctaaaagtgcaattttactatgattgcaaata 320

                                                                       
Query: 121 gaacatgtctataaaatagagataacattgatttgatcaaaattatagagtatgattata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaacatgtctataaaatagagataacattgatttgatcaaaattatagagtatgattata 380

                                                                       
Query: 181 cacacacacacatatatgagaaaaattaagtagacagcctgctgggaagcactatgaatt 240
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacacacacacacatatgagaaaaattaagtagacagcctgctgggaagcactatgaatt 440

                                                                       
Query: 241 ttccattcctacaacgcatagctacagctgtgtctttaatgaaggagaagtaatatcagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttccattcctacaacgcatagctacagctgtgtctttaatgaaggagaagtaatatcagt 500

                                                                       
Query: 301 gccttagcagcattctttgcttttgggacaaccatttcctgtggaacaacagagagcaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gccttagcagcattctttgcttttgggacaaccatttcctgtggaacaacagagagcaat 560

                                                                       
Query: 361 ttaagttattaaagctgaatgattttaaaggtttaatggaggtggtcaatgtataaaggt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttaagttattaaagctgaatgattttaaaggtttaatggaggtggtcaatgtataaaggt 620

                                                                       
Query: 421 taaaaaaaataccatgtttggactttaataaaatgtaagacttaatactgtactccttct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taaaaaaaataccatgtttggactttaataaaatgtaagacttaatactgtactccttct 680

                                                                       
Query: 481 tttattgagaataatttgtgttaatatgtgttcatttaggacatgcatattttgctatat 540
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 681 tttattgagaataatttgtgttaatatgcgttcatttaggacatgcatattttgctatat 740

                                                                       
Query: 541 gtttctcttgatgtttagatcagaagtcagcattatgtaccacatctggagagcactatc 600
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 741 gtttctcttgatgtttagatcagaagtcagcattatgtacgacatctggagagcactatc 800

                                                   
Query: 601 atttttatatgtttctaacggttttgtcacttttttccct 640
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 atttttatatgtttctaacggttttgtcacttttttccct 840


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1040
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1030
Effective search space:   648900
Effective search space used:   648900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no493_c11.g1 MSMg01no493_c11.g1 CHROMAT_FILE:
MSMg01no493_c11.g1 PHD_FILE: MSMg01no493_c11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:35 2005
         (628 letters)



>mm_chr15_94687353_94688380
          Length = 1028

 Score = 1183 bits (612), Expect = 0.0
 Identities = 624/628 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttaagggagacaggacaaactctcctttgaccaaactgtagcaagatgtatacatcaacg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 ttaagggagacaggacaaactctcctttgaccaaactgtagcaagatgtatacatcaacg 769

                                                                       
Query: 61  aactaacgcatcatctaattttgctacttcgccttatccccttggcatcctggaacgcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 aactaacgcatcatctaattttgctacttcgccttatccccttggcatcctggaacgcca 709

                                                                       
Query: 121 gcctcattccaggtctgtggtttgccaggaaactgctccctgctcctgacacacttgctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 gcctcattccaggtctgtggtttgccaggaaactgctccctgctcctgacacacttgctt 649

                                                                       
Query: 181 ttatattttcaacaatcaacctctttgcctttttaaatggaaataatgtcctcattctat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 ttatattttcaacaatcaacctctttgcctttttaaatggaaataatgtcctcattctat 589

                                                                       
Query: 241 ttcccttttctgagccgccactgaagcggagcccggctctgccctcttctaaaacagtag 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 ttccctttgctgagccgccactgaagcggagcccggctctgccctcttctaaaacagtag 529

                                                                       
Query: 301 tctcttcccagttaatagagttattttttaaaattgttaattaaatggcaattgttagaa 360
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 528 tctcttcccagttaatagagttatttttttaaattgttaattaaatggcaattgttagaa 469

                                                                       
Query: 361 acaaatgcgtctcattactcagtgagaaaggaattagcttctacattaacctgcattctt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 acaaatgcgtctcattactcagtgagaaaggaattagcttctacattaacctgcattctt 409

                                                                       
Query: 421 ttcatgaacccattttcaccattttttttcttttttcttgaggttttaaaccataagcat 480
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 408 ttcatgaacccattttcaccattttttttctttcttcttgaggttttaaaccataagcat 349

                                                                       
Query: 481 gcaagagttcactactaaaatatgaaaaacattttaaaattggaaggaacagatacccaa 540
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 gcaagagttcaccactaaaatatgaaaaacattttaaaattggaaggaacagatacccaa 289

                                                                       
Query: 541 cagtctatcactcagtacaacgatcccaatttccttccaatacatttcttgtacagattt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 cagtctatcactcagtacaacgatcccaatttccttccaatacatttcttgtacagattt 229

                                       
Query: 601 ttaagtcaagaaatcaaatgtattaaat 628
           ||||||||||||||||||||||||||||
Sbjct: 228 ttaagtcaagaaatcaaatgtattaaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space:   629124
Effective search space used:   629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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