BAC Information

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BAC

Clone NameMSMg01-493G05
Chromosome15 (Build37)
Map Location 94,621,806 - 94,622,354
singlet/doubletsinglet
Overlap geneTmem117
Upstream geneD630010B17Rik, Adamts20, Pus7l, Irak4, Twf1
Downstream geneLOC100043315, Nell2, Dbx2, LOC100042684, LOC667849, EG629300, LOC667864, Tmem16f
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-493G05.T7 (MSMg01no493_g05.b1)MSMg01-493G05.TJ (MSMg01no493_g05.g1)
ACCAG570919AG570920
length734873
length of high quality
(start - end)
550 (70 - 619)34 (71 - 104)
definitionCHROMAT_FILE: MSMg01no493_g05.b1 PHD_FILE: MSMg01no493_g05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:17:54 2005CHROMAT_FILE: MSMg01no493_g05.g1 PHD_FILE: MSMg01no493_g05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:17:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAAT
TCTGCAAGATTTCACCTGTCAATCTATGAGCTACTGTGGGCATGTTTCAG
CTCTCAACTGTAGTATGTTTACCTTGTTATTTTTTTAGCTTGTGCTCTCT
ACTGTTTGTATACATTACCCCCCTTCCTATGTATTTCAGAAACAGCTCCA
GCTGAATATGATGAATTCTGTTGTGTGTTACCATATGTAAATGTTCTTCT
AGAAACTAAGGATTAAAACTCCTTTCATTGTCCAAAAACGAAGCTATAGA
TAAATGGAATATATGTTGGTGGATATCCAACTCTTACTAGGCCATGCAGC
CATTGGCTTAACAGTTGTAGCATGTAAAGCATCATTAATGGATGAGTGAC
ATTATTTTATTTTTAATGATTAATCAGTTGCAATGAGGTGTTATTCACTG
CACTGTCACTGTCAGTAAAGGCACTTGGGCATCATGACACAGGGTGTTAG
AATACATGTCACGTAGGACATTGATATCGAGAAGAGAAAGGATTCACGGA
TACTGTTGCCAGATATTTGCTCACATTGTGGACCCTGAGACTGTATACTG
GAAAGCCCTGTCTGCAGTTGTGGGGTGGCTCACACTTTTAATCCAAGAGC
TTTCTGTTTCTTGCAAACAATGTGAAATAAAGTCGACCATAAGCCAAGAG
GCAGAGCAAGCAACCACTTGAACAGGAGTGAACA
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXGGGTGGGTAGGGGAGTGCGGGGGGGAGGGT
ATGGGGCACTTTTTTCACCCCATCGCCAATGTAAGCGAGGACAATACGTA
ATATATCTTATATATATCTCTAGCAACGCTTATATAATTAATAAACACCT
CGATCTCTGATATAACCCATATTTACTTACGTGTGAATGTCCGTGCCCTC
ATTTTCTCTTGATGCGACACCACACCATCTACCCCTATCTAACCCCCCAC
TACTGATAGTTATATAATTGCCCCTTTAATGACATACAACATTCTCCAAG
CATTTTTACCCCCTTTTGTCCCCTCTGCACCGAGTGCAGCACCCCCCCCC
TTTTTTTTTTTTTTTCCCTATCCCGCCTCCCTCACTCTCCTTTTTCCCCC
CCTTATTTTTTTTTCTTTCCACTCCTCCCCCTACCCCCTCTATTCCCCTC
CCCATAATAACATTATCTATTTCCCCCCTCCCTCCCCCCCCCCCTCTCTT
TTCTTTCTTACCTCATACACCCTATAACTATACCCCTAATCCTTTCCCAT
TCTATTCTCTCACCCCCCCCCCCCCCCCATTACCGTATCTCCTTTCTATC
CCCCCCTCCCTCACCTTCAATTTAATCCCCCCGCCCATCACCCTTTTCTT
TTACTTTTTCCCTTTCCACTCTAAAACCACCGCCCCCTTTCAATTAAAAA
TATCACCCCCTTCTCAATACTATAACCCACACACACTCCTACTCCCTCAC
CTCTCACTTTTCACAACAATTCATTTCTACCACATATTACAATTACTAAA
CATCCACCCCCCACCCCTTCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no493_g05.b1 MSMg01no493_g05.b1 CHROMAT_FILE:
MSMg01no493_g05.b1 PHD_FILE: MSMg01no493_g05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:54 2005
         (550 letters)



>mm_chr15_94621606_94622554
          Length = 949

 Score =  971 bits (502), Expect = 0.0
 Identities = 538/550 (97%), Gaps = 1/550 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caatctatgagctactgtgggcatgtttcagctctcaactgtagtatgtttaccttgtta 60
           ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 caatctatgagctactgagggcatgtttcagctctcaactgtagtatgtttatcttgtta 260

                                                                       
Query: 61  tttttttagcttgtgctctctactgtttgtatacattaccccccttcctatgtatttcag 120
           ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 261 tttttttagcttgtgctctctactg-ttgtatgcattaccccccttcctatgtatttcag 319

                                                                       
Query: 121 aaacagctccagctgaatatgatgaattctgttgtgtgttaccatatgtaaatgttcttc 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 320 aaacagctccagctgaatatgatgaattctgttgtgtattaccatatgtaaatgttcttc 379

                                                                       
Query: 181 tagaaactaaggattaaaactcctttcattgtccaaaaacgaagctatagataaatggaa 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ttgaaactaaggattaaaactcctttcattgtccaaaaacgaagctatagataaatggaa 439

                                                                       
Query: 241 tatatgttggtggatatccaactcttactaggccatgcagccattggcttaacagttgta 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 440 tatattttggtggatatccaactcttactaggccatgcagccattggcttaacagttata 499

                                                                       
Query: 301 gcatgtaaagcatcattaatggatgagtgacattattttatttttaatgattaatcagtt 360
           ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 500 gcatgcaaagcatcattaatggacgagtgacattattttatttttaatgattaatcagtt 559

                                                                       
Query: 361 gcaatgaggtgttattcactgcactgtcactgtcagtaaaggcacttgggcatcatgaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gcaatgaggtgttattcactgcactgtcactgtcagtaaaggcacttgggcatcatgaca 619

                                                                       
Query: 421 cagggtgttagaatacatgtcacgtaggacattgatatcgagaagagaaaggattcacgg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 620 cagggtgttagaatacatgtcacgtaggacattgatatcgagaagagaaagcattcacgg 679

                                                                       
Query: 481 atactgttgccagatatttgctcacattgtggaccctgagactgtatactggaaagccct 540
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 atactgttgcaagatatttgctcacattgtggaccctgagactgtatactggaaagccct 739

                     
Query: 541 gtctgcagtt 550
           ||||||||||
Sbjct: 740 gtctgcagtt 749


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 949
Length adjustment: 10
Effective length of query: 540
Effective length of database: 939
Effective search space:   507060
Effective search space used:   507060
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)