BAC Information

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BAC

Clone NameMSMg01-493G23
Chromosome15 (Build37)
Map Location 66,176,466 - 66,351,111
singlet/doubletdoublet
Overlap geneLrrc6, LOC100040860
Upstream geneC920006C10Rik, Oc90, F930104E18Rik, LOC100040835, Kcnq3
Downstream geneTmem71, LOC100040881, Phf20l1, Tg, Sla, Wisp1, Ndrg1, LOC100040667, St3gal1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-493G23.T7 (MSMg01no493_g23.b1)MSMg01-493G23.TJ (MSMg01no493_g23.g1)
ACCAG570955AG570956
length714751
length of high quality
(start - end)		480 (48 - 527)442 (79 - 520)
definitionCHROMAT_FILE: MSMg01no493_g23.b1 PHD_FILE: MSMg01no493_g23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:17:58 2005CHROMAT_FILE: MSMg01no493_g23.g1 PHD_FILE: MSMg01no493_g23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:17:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,176,466 - 66,176,940)(66,350,670 - 66,351,111)
sequence
NNAACCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGGATCCG
CGGAATTCAAATATTCTATCTAGCCAGATTCTTCCAGGCATCATCTGTTT
CATTCTTCCAAGCACTGGAATACATGCAAGCTATCACAAACCACCTGGCA
TTTACATGGTTGCTGACTCTGACCGCTAGTCTTCCTACCTGTGCAACAGT
ATTTGATCCACCTCCCAATCCCTGATTCTTCTTTTTTTCCCCCTACAATG
AGGATGGAGTAATGTTTCTGGCTGGATTTTATTCTAGGTAATGAGTAAAG
CTAGTCCTGCCTGTGGATGTTCGTAGGCTAGTACAGGATGCTGATATTAT
AGAGTACACATTGCTAGTGCCATTGCATGGGGGACTATGAAAAAAAAATC
CTAACTGTAGTGAGACAATTTTAAAAATAGTCTAGGTATGTGGAAAATAT
TTTTCCTGAGAAATTAATGGAAATTGTCACCTTTGAGTGGCTTCCCAGAA
GATGAGTACATGGTAGCTGGGCAAAAGATAGGAATGAGCACACTCAAGAG
AGAAATGGAAAGAGGGGGAGAGGGAGAAAGAGAGAGAGGGGAAGAGGGAT
ATTTTTTTTTTNTTTTTCTTTTTTGTTTTTTTTTTTTTTTTNTTNTTTTG
TTTTTTTTTGGGGTTTTTGTTTTTGGTTTGGTTTTTTTTTTTTTTGTGTT
GTTTTTGTTTTTTT

NNCCGATGCTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGAGTCTTGATCACAGGGGCC
TTTCTACACATCCATACATTGTCAGATTTTATCCTGGGACAGCAGGGAGC
CACTAAAAGTTTTTAAGAAATGGAAGGTCATGTCACTTTGGAGGCTATTG
TCAGAAAATAGACTACTAGTCAACCTTTAAGTACTAGCCATCTCTGCTCC
TAAGGCTTGAGCCATCACTCTTCTTAAAACTGTCAGTCATAGGGGAACAG
GGAGTGTCTGTCTAAAGATGGGACTCACAGAGAGAAGTGGTCCCTGCTTC
CTATTGTTGACACTTCACCAGTCCCAGGCTGAATGCAATTGTCTTCAATG
AAGCTGTCATCGTTCCCATCTTCATCCACCGGGGCTCATTCCCATCCCCT
GTTGGGTGGGATGCCACCCTATGAGATTCCACAGTGAATGAAGCCAATAA
CTGGCATGATATTGGTGGTAGAGATGACACTTGGCAGTAAGCATGATGAG
TATGGAGAAAACCACTGCCCCTCTACATACTTGGGACATATTTGACCATG
TCTGACTCTGGTGCTCAGTTCAGGGGCNATGGCTGATATAGTGGAGAGAA
TCTAATATTCAACCCTTGTTTGGATAAATATTTACTCATGGAGAAGCAGA
GTCTTGGGCTCTTGCAAGAAAAAAAAATGTTTCAGGGGACAGGGTTTCAG
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no493_g23.b1 MSMg01no493_g23.b1 CHROMAT_FILE:
MSMg01no493_g23.b1 PHD_FILE: MSMg01no493_g23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:58 2005
         (480 letters)



>mm_chr15_66176261_66177140
          Length = 880

 Score =  903 bits (467), Expect = 0.0
 Identities = 473/475 (99%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattcaaatattctatctagccagattcttccaggcatcatctgtttcattcttccaag 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcaaatattctatctagccagattcttccaggcatcatctgtttcattcttccaag 265

                                                                       
Query: 66  cactggaatacatgcaagctatcacaaaccacctggcatttacatggttgctgactctga 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 cactggaatacatgcaagctatcacaaaccacctggcatttacatggttgctgactctga 325

                                                                       
Query: 126 ccgctagtcttcctacctgtgcaacagtatttgatccacctcccaatccctgattcttct 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ccgctagtcttcctacctgtgcaacagtatttgatccacctcccaatccctgattcttct 385

                                                                       
Query: 186 ttttttccccctacaatgaggatggagtaatgtttctggctggattttattctaggtaat 245
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 386 ttttttccccctacaatgaggatggagtaatgtttctggctggattttcttctaggtaat 445

                                                                       
Query: 246 gagtaaagctagtcctgcctgtggatgttcgtaggctagtacaggatgctgatattatag 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 446 gagtaaagctagtcctgcctgtggatgttcgtaggctagtacaggatgctgatattacag 505

                                                                       
Query: 306 agtacacattgctagtgccattgcatgggggactatgaaaaaaaaatcctaactgtagtg 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 agtacacattgctagtgccattgcatgggggactatgaaaaaaaaatcctaactgtagtg 565

                                                                       
Query: 366 agacaattttaaaaatagtctaggtatgtggaaaatatttttcctgagaaattaatggaa 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 agacaattttaaaaatagtctaggtatgtggaaaatatttttcctgagaaattaatggaa 625

                                                                  
Query: 426 attgtcacctttgagtggcttcccagaagatgagtacatggtagctgggcaaaag 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 attgtcacctttgagtggcttcccagaagatgagtacatggtagctgggcaaaag 680


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space:   408900
Effective search space used:   408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no493_g23.g1 MSMg01no493_g23.g1 CHROMAT_FILE:
MSMg01no493_g23.g1 PHD_FILE: MSMg01no493_g23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:58 2005
         (442 letters)



>mm_chr15_66350470_66351311
          Length = 842

 Score =  847 bits (438), Expect = 0.0
 Identities = 441/442 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagagtcttgatcacaggggcctttctacacatccatacattgtcagattttatcctggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 aagagtcttgatcacaggggcctttctacacatccatacattgtcagattttatcctggg 583

                                                                       
Query: 61  acagcagggagccactaaaagtttttaagaaatggaaggtcatgtcactttggaggctat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 acagcagggagccactaaaagtttttaagaaatggaaggtcatgtcactttggaggctat 523

                                                                       
Query: 121 tgtcagaaaatagactactagtcaacctttaagtactagccatctctgctcctaaggctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tgtcagaaaatagactactagtcaacctttaagtactagccatctctgctcctaaggctt 463

                                                                       
Query: 181 gagccatcactcttcttaaaactgtcagtcataggggaacagggagtgtctgtctaaaga 240
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 462 gagccatcactcttcttaaaaccgtcagtcataggggaacagggagtgtctgtctaaaga 403

                                                                       
Query: 241 tgggactcacagagagaagtggtccctgcttcctattgttgacacttcaccagtcccagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 tgggactcacagagagaagtggtccctgcttcctattgttgacacttcaccagtcccagg 343

                                                                       
Query: 301 ctgaatgcaattgtcttcaatgaagctgtcatcgttcccatcttcatccaccggggctca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ctgaatgcaattgtcttcaatgaagctgtcatcgttcccatcttcatccaccggggctca 283

                                                                       
Query: 361 ttcccatcccctgttgggtgggatgccaccctatgagattccacagtgaatgaagccaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ttcccatcccctgttgggtgggatgccaccctatgagattccacagtgaatgaagccaat 223

                                 
Query: 421 aactggcatgatattggtggta 442
           ||||||||||||||||||||||
Sbjct: 222 aactggcatgatattggtggta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 842
Length adjustment: 9
Effective length of query: 433
Effective length of database: 833
Effective search space:   360689
Effective search space used:   360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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