BAC Information

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BAC

Clone NameMSMg01-495D16
Chromosome15 (Build37)
Map Location 82,662,096 - 82,662,468
singlet/doubletsinglet
Overlap geneTcf20
Upstream geneLOC667073, Tob2, Phf5a, Aco2, Polr3h, Csdc2, Pmm1, EG545121, 1700029P11Rik, D15Wsu75e, Xrcc6, Nhp2l1, 4930407I10Rik, Mei1, Ccdc134, Srebf2, LOC435145, Tnfrsf13c, Cenpm, 1500009C09Rik, Sept3, Wbp2nl, Naga, C920005C14Rik, 1500032L24Rik, Ndufa6, Cyp2d22, LOC545123, Cyp2d10, Cyp2d9, EG545124, EG667196, EG667177, 9030605E09Rik, BC018285, Cyp2d13, LOC380998, LOC627860, LOC676200, 1300013D18Rik, LOC271300, Cyp2d26
Downstream geneNfam1, Serhl, 1110014J01Rik, Poldip3, Cyb5r3, A4galt, LOC100042119, Arfgap3, Pacsin2, LOC414359, Ttll1, Bik, Mcat, Tspo, Ttll12, Scube1, Mpped1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-495D16.T7 (MSMg01no495_d16.b1)MSMg01-495D16.TJ (MSMg01no495_d16.g1)
ACCAG572323AG572324
length750747
length of high quality
(start - end)
615 (67 - 681)664 (81 - 744)
definitionCHROMAT_FILE: MSMg01no495_d16.b1 PHD_FILE: MSMg01no495_d16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:16 2005CHROMAT_FILE: MSMg01no495_d16.g1 PHD_FILE: MSMg01no495_d16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCTTAATTGCGGCGCTAAACGACTCCTAATCATAGACAGCCGCGGAATT
CCAGGATTGCCTGTACGAGGAGCCTGCTCTCTCCTTCAAGTCGGTCTAGT
CCTAGAACTACTTTTTGATGGGAGGTCTTATGGGAGTGAGGATGGACAGT
TTTATTGAGAGATTGTTTCTATCTTTGGGGACTTTGAGCTATATGTGATT
TTTTTTTTCTTTTCCTTCCTTCTTTCCTTTTCTTCCTTTGATTTCTTTCC
TCTTTCGTTCCTTAACTTCCTTCCCTTCCTTTCTTTCCTTTCCCTCTCCC
TCCTTCCCTTCCTTCTTCTTTCTTTTCTCTTTTCTTTTTTTTCCTGTCTT
GTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTT
GTCTTGTCTTGTCTTGTCCTGTCCTGTCCTGTCCTGTCCTGTCCTGTCCT
GTCCTGTCCTGTCCTGTCCTGTCCTGTCCTGTCCTGTCCTGTCCTGTCCT
GACCTGTCTTTTCATACAAGGTGTCTTGCTTTAAGTCAGCTGGCCAGACT
TAATTCTTCTGCCTTCTGGCTTACAGGTGTACCACCATGACGGATGTGAT
GTAGTTGCTCAGATTGGCTTAGTAAGCCCTTCTCAGATTGTCAGTGGTTT
TGAACTCTTGCTAATTCTTTCATTTATGTGTTCATGTGTATTTCCGTCCC
CATTTAAACATCTTCCAACAAGAGACTTTTTAAAAAAAGAGTATTGCTCC

NNNACCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTAAAATTATATCTATGATT
ATTAAGCTCTTTTATAATGGGACTGCTATTAGGTCCTTTTCTGTTAATCA
AAGCTGCAATGAGAACTCTGCCATTCCTCGAGTGCTACCAGGTAATTGCT
CTTAGATAGTAACCAGATTTTCTCCTACTCAGAGCACATCCCAGGAGGTT
GTAAAACAATTAACCAAAGGTCATAAAATGGATTTATTATAGGTGCAGAT
AAAATAAATAAATTATTGACTGGTGTTATCTACAGTAAAAACTTCACTAA
TAACTTAGTTACGGTTTTAAACCTTCAGTGAACCTGTGGAGCTGAGACAG
GTGATAGATATTTAGCTAGATAATCACTCCTAATGGATATGCATGTAAAC
ATTCTCTGTTGTAAACTCCTATTTCAATTTATGATTTGATTTTCTGTGTG
AAATTTTGATGAACTTTTTAACATGTGATCATATATTCTGAATGATGTTT
AGGGGCTGAGGACAAAGAGAAGAGTCAGAACTGAGGGACTGGGGTGAGAG
GAATAGAGGTGAGAAGAACTGAGCTGAGAAGTGTTTAGACAGAAAACTTT
CTAGATTAGAAGGAGACTGCAGAGTGGAATAATTTAGAAATTATAGGTAA
CATAAAATAATAAGAGAGCAATGTGCAGAATGCAGAGGGAAAGAGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no495_d16.b1 MSMg01no495_d16.b1 CHROMAT_FILE:
MSMg01no495_d16.b1 PHD_FILE: MSMg01no495_d16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:16 2005
         (615 letters)



>mm_chr15_82661454_82662468
          Length = 1015

 Score =  522 bits (270), Expect = e-152
 Identities = 367/452 (81%), Gaps = 83/452 (18%)
 Strand = Plus / Minus

                                                                        
Query: 168  tcctttgatttctttcctctttcgttccttaacttccttcccttc----ctttctttcct 223
            |||||||||||||||||||||||||||||||||||||||||||||    |||||||||||
Sbjct: 1015 tcctttgatttctttcctctttcgttccttaacttccttcccttcctttctttctttcct 956

                                                                        
Query: 224  ttccctctccctccttcccttccttcttctttcttttctcttttcttttttttcctgtct 283
            |||||||||||||||||||| ||| |  |  |||||||||||||||||||||||||||||
Sbjct: 955  ttccctctccctccttccctccctcc--c--tcttttctcttttcttttttttcctgtct 900

                                                                        
Query: 284  tgtcttgtcttgtcttgtcttgtcttgtcttgtcttgtcttgtcttgtcttgtcttgtct 343
            ||||||||||||||||||||                                        
Sbjct: 899  tgtcttgtcttgtcttgtct---------------------------------------- 880

                                                                        
Query: 344  tgtcttgtcctgtcctgtcctgtcctgtcctgtcctgtcctgtcctgtcctgtcctgtcc 403
                                               |||||||||||||||||||||||||
Sbjct: 879  -----------------------------------tgtcctgtcctgtcctgtcctgtcc 855

                                                                        
Query: 404  tgtcctgtcctgtcctgtcctgtcctgtcctgacctgtcttttcatacaaggtgtcttgc 463
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854  tgtcctgtcctgtcctgtcctgtcctgtcctgacctgtcttttcatacaaggtgtcttgc 795

                                                                        
Query: 464  tttaagtcagctggccagacttaattcttctgccttctggcttacaggtgtaccaccatg 523
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794  tttaagtcagctggccagacttaattcttctgccttctggcttacaggtgtaccaccatg 735

                                                                        
Query: 524  acggatgtgatgtagttgctcagattggcttagtaagcccttctcagattgtcagtggtt 583
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734  acggatgtgatgtagttgctcagattggcttagtaagcccttctcagattgtcagtggtt 675

                                            
Query: 584  ttgaactcttgctaattctttcatttatgtgt 615
            ||||||||||||||||||||||||||||||||
Sbjct: 674  ttgaactcttgctaattctttcatttatgtgt 643


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 60
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1015
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1005
Effective search space:   608025
Effective search space used:   608025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)