BAC Information

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BAC

Clone NameMSMg01-495M20
Chromosome15 (Build37)
Map Location 92,196,980 - 92,197,512
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc2a13, Lrrk2, Muc19, Smgc, LOC100042529, Cntn1
Downstream genePdzrn4, LOC100042552, LOC100043283, Glt8d3, Yaf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-495M20.T7 (MSMg01no495_m20.b1)MSMg01-495M20.TJ (MSMg01no495_m20.g1)
ACCAG572759AG572760
length767756
length of high quality
(start - end)
611 (74 - 684)668 (80 - 747)
definitionCHROMAT_FILE: MSMg01no495_m20.b1 PHD_FILE: MSMg01no495_m20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:56 2005CHROMAT_FILE: MSMg01no495_m20.g1 PHD_FILE: MSMg01no495_m20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATAATTTGCGGTTGCTATACGACTCACTAATCGGAGACGAGCCGCGGAA
TTCCCCTGGTTTCGGGAATATACAGTTTGCAAGTCCAATGGGCCTCTCTT
TCCAGGGATGGCCGACTAGGCCATCTTTTGATATATATGCAGCTAGAGTC
AAGAGCTCCGGGGTACTGGTTAGTTCATAATGTTGTTCCACCTATAGGGT
TGCAGATCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGGA
GCCCTATGATCCATCCATTAGCTGACTGTGAGCATCCACTTCTGTGTTTG
CTAGGCCCCGGCATATTCTTACAAGAGACAGCTACATCTGGGTCCTTTCA
ATAAAATCTTGCTAGTGTATGCAATGGTGTCAGCGTTTGGATGCTGATTA
TGGGGTGGATCCCTGGATATGGCAGTCTCTACATGGTCCATCCTTTCATC
TCAGCTCCAAACTTTGTCTCTGTAACTCCTTCCATGGGTGTTTTGTTCCC
AAATCTAAGGAGAGGCATAGTGTCCACACTTCAGTCTTCATTCTTCTTGA
GTTTCATGTGTTTAGCAAATTATATCTTATATCTTGGGTATCCTAGGTTT
GGGGCTAATATCCACTTATCAGTGAATACATATTGTGTGAGTTTCTTTGT
GAATGTGTTACCTCACTCAGGATGATGCCCTCCAGGTCCATCCATTTGCC
TAGGAATTTCATAAATTCATTCTTTTTAATAGCTGAGTAGTACTCCATTG
TGTAGATGTACCACATN
NCCCTATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGACTTTGCAAGTGACAATCA
TCTTTGCATCAGAAGTAGAATTCTGAAAATGTAGAGTGACTCATTTTTCT
ACATCAAAGTGTTATTTAATGACTTAAGTGAAATAAAATATTACTGATAA
GCATAGTCCTGCATATAATCTTCACAAGAGATAATTTATCTTAAAACATA
TCCAGTTATACCTATTTTCATAGGAATAAATTAAATAAGACTTAAATGTA
ATATGACTCTTCAATAACACAAAACTCAGTGTCTGTGTTTGTTCCTTGTA
AATAAACACACAGTATACATTTTAATAAATTTTATTTTAACAATTATGTA
AATAAAAAAAATTACACAGTGAATTTATTAGATCTAAGGTTTGTATACCT
CAGTGAACTTCTGGGAAGTTACAATAGGCATTTGGAGGCTGTGGGCTTCA
TATTGGGTTCTATACTTAGACCACTGAATATATTTATGTATTTACCCACC
ACCAAAAATATAAAGAAAAATCATGACAGAGTTAGACCTAGATAACTAGT
TAGCTTTATATTCGCTCTCATGCTCATGACCTGCATTCAGTATTCATTTC
ATATTTTGGTAACCAAGTAACAAGAAGAAATACTGATAAGGGGGAGAGTG
TTGTCACTATGGGAACAACTTTCGATCAAAAATACAGCTGACGCAGATCT
CTCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no495_m20.g1 MSMg01no495_m20.g1 CHROMAT_FILE:
MSMg01no495_m20.g1 PHD_FILE: MSMg01no495_m20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:56 2005
         (668 letters)



>mm_chr15_92196445_92197512
          Length = 1068

 Score =  967 bits (500), Expect = 0.0
 Identities = 525/534 (98%), Gaps = 3/534 (0%)
 Strand = Plus / Minus

                                                                        
Query: 137  taatcttcacaagagataatttatcttaaaacatatccagttatacctattttcatagga 196
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1068 taatcttcacaagagataatttatcttaaaacatatccagttatacctattttcatagga 1009

                                                                        
Query: 197  ataaattaaataagacttaaatgtaatatgactcttcaataacacaaaact--cagtgtc 254
            |||||||||||||| ||| ||||||||||||||||||||||||||||||||  |||||||
Sbjct: 1008 ataaattaaataagtctttaatgtaatatgactcttcaataacacaaaactcacagtgtc 949

                                                                        
Query: 255  tgtgtttgttccttgtaaataaacacacagtatacattttaataaattttattttaacaa 314
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 948  tgtgtttgttccttgtaaataaacacacagaatacattttaataaattttattttaacaa 889

                                                                        
Query: 315  ttatgtaaataaaaaaaattacacagtgaatttattagatctaaggtttgtatacctcag 374
            |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 888  ttatgtaaat-aaaaaaattacacagtgaatttattagacctaaggtttgtatacctcag 830

                                                                        
Query: 375  tgaacttctgggaagttacaataggcatttggaggctgtgggcttcatattgggttctat 434
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829  tgaacttctgggaagttacaataggcatttggaggctgtgggcttcatattgggttctat 770

                                                                        
Query: 435  acttagaccactgaatatatttatgtatttacccaccaccaaaaatataaagaaaaatca 494
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 769  acttagaccactgaatatatttatgtatttaaccaccaccaaaaatataaagaaaaatca 710

                                                                        
Query: 495  tgacagagttagacctagataactagttagctttatattcgctctcatgctcatgacctg 554
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709  tgacagagttagacctagataactagttagctttatattcgctctcatgctcatgacctg 650

                                                                        
Query: 555  cattcagtattcatttcatattttggtaaccaagtaacaagaagaaatactgataagggg 614
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649  cattcagtattcatttcatattttggtaaccaagtaacaagaagaaatactgataagggg 590

                                                                  
Query: 615  gagagtgttgtcactatgggaacaactttcgatcaaaaatacagctgacgcaga 668
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 589  gagagtgttgtcactatgggaacaacttttgatcaaaaatacagctgacgcaga 536


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1068
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1058
Effective search space:   696164
Effective search space used:   696164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)