BAC Information

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BAC

Clone NameMSMg01-498B10
Chromosome15 (Build37)
Map Location 55,107,740 - 55,108,342
singlet/doubletsinglet
Overlap genenone
Upstream geneTnfrsf11b, LOC665280, EG383032, Colec10, Mal2, Nov, LOC665302, LOC100039816, Enpp2, LOC100039911, LOC100039822, Taf2, 2600005O03Rik, Depdc6
Downstream geneCol14a1, Mrpl13, Mtbp, Sntb1, LOC665348, LOC100039908, Hba-ps3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-498B10.T7 (MSMg01no498_b10.b1)MSMg01-498B10.TJ (MSMg01no498_b10.g1)
ACCAG574498AG574499
length773849
length of high quality
(start - end)
605 (53 - 657)144 (81 - 224)
definitionCHROMAT_FILE: MSMg01no498_b10.b1 PHD_FILE: MSMg01no498_b10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:59 2005CHROMAT_FILE: MSMg01no498_b10.g1 PHD_FILE: MSMg01no498_b10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCCACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTTGGTATTCCAGCCACGTAGTGAGTGGGTGGAGTTTAG
ATCCGTGCCCGAGTCATCGGTGGAAGAGAGCACCCCCTTACCCTAGGCTC
TGCTAAGCAGAAGGGAACTCTTATGAATCAAGTCACTGAGAGTTGGGAAT
TTTTGTTATTATAGTTCATGTTGGCATAATGATATTAAAGAGAAGAGTGT
GCACGGCGCGCGCGCGCGTGCGCACACACACACACACGGCAGTAAATTCT
TTTTTGTTTGTCGTTCAGTGCTGAAAATTGTTTTCTAGCACATTTTACCA
CTATAGCCCCAGTGAAGTAGAAGATTCACACAAGTAATAAGTCAGCAGAG
CTGAGTGGAAGAAGTTTTGGAAAGCCATAGAGCATCCTCCGGCTTAGAGG
TGAACCCGGGGTTACACGGTGACCGTGGCAGAGCTGAGATGCAAATCAAG
TGTGTCCTTCTGCAGGAACTGTATTTTCCAGCAGCTTTGAGAGAAACAGC
AGAGGAGTCTTCTGGAAGGGTCAGTGCTAAGGTACAAGGTCTCGGGAGAC
AAAACAGGCTGAATTAAATATTAACTGAGGAGTTTTTGGATGAAGGATGA
TGCAGAGCCTCACAGGCAGTGAAGAAGCAACTGTGAGCTGCACCGAACTG
TGAAAATAGATCACGCAGTCCGAAGTCCAAGGATGAGAGCTAAGCTGACT
ATAGAGCCCTGAAATTGACATCT
NNNNNNACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATGTCTGGATATTTTTTTT
AACTCTTAAGAACTCCCAAGGCAGGATGTTTGAATCTCACCCAGAAGGGG
AACTAAAAGAGTCATTGGAAGTGGATGGAGGGAGGGAACTGGGTGGAAGA
GGGGATGGGGAGTGAAATGGGGGCGGCTATTCCCCCGTGGGCTTTTCCTG
CTCCATCTGTTTGTTGATCCCTTGATTACCTTGCTGCTAATTTGTCTATT
ATGTCCTCATTGCCTACGTTCCGCCCTTTTTTTTTTCACAGCACGCTGTT
TCTGCCTTCCTTCTTTTCTTTATCCTCCAGTTTACCCTGTCTCTGTCACT
TCTTTTCCTTTCAGATTTCTGTTTCCCCCCCCGTCCCACGTTTTTTGCTT
TTATCCCTTTTTTCTTCATTCTTTTTGATGTCCACCTTTCTTTATTAGGG
TTCTGTATTTTTTTTCTCCCCTTTTTTCTCCTTTCTTAGCCTCCTCTTGT
TTTCTTCCTGCTTCATATAATTTGCCCTTATTGACCTCTTCAGTCTTTTT
TTACTTTTTCAATTTTTTTTTCTCCTTCTCTTTGCACTCTGTTTCTTATT
CTTTGCCCGCTCGTTGTGATCCTTCCTTTTCTTTCTTTTTTAATCTGTTT
TTTTATTTTTTTTTTTTTCCCTCTTTTTTCCTCGTTTTTTCCTTTTTTTG
TCCCTTTATCCCCTTTCTGTTTCTTTACCCCTCACCCTCGTTTTTTTGCC
TTTCCATTTTCTCTACCTTTTTATTTCCGCTTCTTTTTTCCTCTCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no498_b10.b1 MSMg01no498_b10.b1 CHROMAT_FILE:
MSMg01no498_b10.b1 PHD_FILE: MSMg01no498_b10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:59 2005
         (605 letters)



>mm_chr15_55107539_55108542
          Length = 1004

 Score =  984 bits (509), Expect = 0.0
 Identities = 572/607 (94%), Gaps = 26/607 (4%)
 Strand = Plus / Plus

                                                                       
Query: 21  agccacgtagtgagtgggtggagtttagatccgtgcccgagtcatcggtggaagagagca 80
           ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||
Sbjct: 202 agccacgtagtgagtgggtggagtttagatccgtgct-gagtcatcggtggaagagagca 260

                                                                       
Query: 81  cccccttaccctaggctctgctaagcagaagggaactcttatgaatcaagtcactgagag 140
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccccgtaccctaggctctgctaagcagaagggaactcttatgaatcaagtcactgagag 320

                                                                       
Query: 141 ttgggaatttttgttattatagttcatgttggcataatgatattaaagagaagagtgtgc 200
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 ttgggaatttttgttattatagttcatgttggcataataatattaaagagaagagtgtgc 380

                                                                       
Query: 201 acggcgcgcgcgcgc----gtgcgcacacacacacacac----------------ggcag 240
           |||||||||||||||    | ||||||||||||||||||                |||||
Sbjct: 381 acggcgcgcgcgcgcacacgcgcgcacacacacacacacacacacacacacacacggcag 440

                                                                       
Query: 241 taaattcttttttgtttgtcgttcagtgctgaaaattg--ttttctagcacattttacca 298
           | ||||||||||||||||||||||||||||||||||||  |   ||||||||||||||||
Sbjct: 441 ttaattcttttttgtttgtcgttcagtgctgaaaattgaat---ctagcacattttacca 497

                                                                       
Query: 299 ctatagccccagtgaagtagaagattcacacaagtaataagtcagcagagctgagtggaa 358
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 498 ctatagccccagtgaagtagaagattcacccaagtaataagtcagcagagctgagtggaa 557

                                                                       
Query: 359 gaagttttggaaagccatagagcatcctccggcttagaggtgaacccggggttacacggt 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 gaagttttggaaagccatagagcatcctccggcttagaggtgaacccggggttacacggt 617

                                                                       
Query: 419 gaccgtggcagagctgagatgcaaatcaagtgtgtccttctgcaggaactgtattttcca 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 gaccgtggcagagctgagatgcaaatcaagtgtgtccttctgcaggaactgtattttcca 677

                                                                       
Query: 479 gcagctttgagagaaacagcagaggagtcttctggaagggtcagtgctaaggtacaaggt 538
           ||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 678 gcagctttgagagaaaccgcaaaggagtcttctggaagggtcagtgctaaggcacaaggt 737

                                                                       
Query: 539 ctcgggagacaaaacaggctgaattaaatattaactgaggagtttttggatgaaggatga 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 ctcgggagacaaaacaggctgaattaaatattaactgaggagtttttggatgaaggatga 797

                  
Query: 599 tgcagag 605
           |||||||
Sbjct: 798 tgcagag 804


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1004
Length adjustment: 10
Effective length of query: 595
Effective length of database: 994
Effective search space:   591430
Effective search space used:   591430
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)