BAC Information

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BAC

Clone NameMSMg01-499J12
Chromosome15 (Build37)
Map Location 86,187,228 - 86,322,960
singlet/doubletdoublet
Overlap geneTbc1d22a
Upstream geneAtxn10, EG223745, Wnt7b, LOC100042240, Ppara, 2210021J22Rik, Pkdrej, AW124722, Gtse1, Trmu, Celsr1, BC021523, Cerk, LOC100042300
Downstream geneLOC100042309
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-499J12.T7 (MSMg01no499_j12.b1)MSMg01-499J12.TJ (MSMg01no499_j12.g1)
ACCAG575639AG575640
length692711
length of high quality
(start - end)
240 (346 - 585)279 (299 - 577)
definitionCHROMAT_FILE: MSMg01no499_j12.b1 PHD_FILE: MSMg01no499_j12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:00 2005CHROMAT_FILE: MSMg01no499_j12.g1 PHD_FILE: MSMg01no499_j12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,322,708 - 86,322,960)(86,187,228 - 86,187,502)
sequence
NAACAAAGTGNCTACTCGCCGGAANNNANAGNCCTTTCGGGACCGAGGAC
CNCAGCAGCGCCAGGGGNCGGNNAGNNCCNCAGAANGGTTCACGCCCCAA
CCANGGGCAANGAGNGNGGAGACCAGGCAGNACAGGGAGNAAGGACAGGC
NCAAAAGNGCNAGGCAGCCAGGGCCAAANACCACCCCGGCCNNNGCNGCN
GNGNGACNCNGGGCAAANCNCATTTTTCTACTGCTTCTGTTTCTCGTCTA
CAAAATGGAGACAGTGCTGAGAGCTCTCCGGNTGGNTGCTGTGCTCGTTC
TCACNCNCCCAGAANGCNCACNANNCAGGGACTTTTTCCTGCCCTGCCAC
TGATTAATAGTACAGCCATCACTAGTGAGGTGGCTGGCACCCCGAGGATG
TATGAATGTCTCAGCAGTACAGCTTGGAAGAAGAAACCTGCTGCTGAACA
AAGTCCCTGTCTATGTGATAGGAGAAGTCATTTAGCGAAAGGCTGGGGGG
TGGGGGGCAGACAGACAGATGGCATGTGTGTGCTCATGTGTGTGGAGGCC
AGAGGATGATCTTGGGAGTTACTCTCACGAGCTGTCCTCCTCAGAGAGAC
CTGGGCTTCACCATAGGACTAGGGTATTTTTTTCTTTTAGCAAGTCCTAA
AGAAACGTCTCCAGTGTTGGAACTCCAAGCATACCGCACTGT
GGTTTTCAAACAAGGGNNGAACANAGAAGGATTCGAAAAATAGCGGTCAT
TACATTCTGCGTCCCAGTAGACATAAGAGGAGAGGATTAGTGGACTGAGA
GGGTCTGAGGAGATGAAGGGGCAGAGCAAACCCAGACAGAGAGAATGGCT
GGAGGGAAGATAGCAGTGGGAAGATGACAACAGAAGCTTGGGCTTTTGGT
TTGTTTTATTTTATGTGAGGATTTACAGTGTGGGTGCCACAATCACCTTA
GCCTTGGAATCTTGACCCTTGTTGCTTAGAGTCAATATTTAATAANGAAT
CTGAGAGAGAGAGAGAGAGAGAGACAGAGAGAGACAGAGAGAGACAGAGA
CACACCAAGTGCAAACCATACAGATGAGAGGTGGGAGAGAGGGACAGATA
TGAGGGACATGCAGAGGGAGGGTCGGTGGTAACTATAGGATGGAGATGAG
GTAGGTGAGAAACAGGGATGGCAGAGGCTGGAGAAAGCGAGAAGATATGC
TTGCCGCTATGAAGAAAAGATACCTCTGAAGGAGACTGGATTAAAATTTT
GGACCCTTATGGTCTAGCTACCCCTCAGGAGTCAGACTTGATTGGGTGGG
TAGAGCTCTGGCTCCTGATTAAAGGCTTTCCAGATGACCACTCAGCTAGT
TCACAGCCACCTGTAACTCTAGCTTGAGGGGACCCCATGACCTCTTTTAG
TGTATGTGTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no499_j12.b1 MSMg01no499_j12.b1 CHROMAT_FILE:
MSMg01no499_j12.b1 PHD_FILE: MSMg01no499_j12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:00 2005
         (240 letters)



>mm_chr15_86322499_86323139
          Length = 641

 Score =  373 bits (193), Expect = e-108
 Identities = 234/253 (92%), Gaps = 13/253 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   gccactgattaatagtacagccatcactagtgaggtggctggcaccccgaggatgtatga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 462 gccactgattaatagtacagccatcactagtgaggtggctggcaccccgaggatgcagga 403

                                                                       
Query: 61  atgtct----ca--g-----c-agtacagcttggaagaagaaacctgctgctgaacaaag 108
           ||||||    ||  |     | ||||||||||||||||||||||||||||||||||||||
Sbjct: 402 atgtcttgtacattgtcttccaagtacagcttggaagaagaaacctgctgctgaacaaag 343

                                                                       
Query: 109 tccctgtctatgtgataggagaagtcatttagc-gaaaggctggggggtggggggcagac 167
           |||||||||||| |||||||||||||||||||| |  |||||||||||||||||||||||
Sbjct: 342 tccctgtctatgcgataggagaagtcatttagcaggtaggctggggggtggggggcagac 283

                                                                       
Query: 168 agacagatggcatgtgtgtgctcatgtgtgtggaggccagaggatgatcttgggagttac 227
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 282 agacagatggcatgtgtgtgctcatgtgtgtggaggccagaggataatcttgggagttac 223

                        
Query: 228 tctcacgagctgt 240
           |||||||||||||
Sbjct: 222 tctcacgagctgt 210


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 641
Length adjustment: 9
Effective length of query: 231
Effective length of database: 632
Effective search space:   145992
Effective search space used:   145992
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no499_j12.g1 MSMg01no499_j12.g1 CHROMAT_FILE:
MSMg01no499_j12.g1 PHD_FILE: MSMg01no499_j12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:00 2005
         (279 letters)



>mm_chr15_86187024_86187702
          Length = 679

 Score =  532 bits (275), Expect = e-155
 Identities = 275/275 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gagagagagagagagagagagacagagagagacagagagagacagagacacaccaagtgc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gagagagagagagagagagagacagagagagacagagagagacagagacacaccaagtgc 264

                                                                       
Query: 65  aaaccatacagatgagaggtgggagagagggacagatatgagggacatgcagagggaggg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaaccatacagatgagaggtgggagagagggacagatatgagggacatgcagagggaggg 324

                                                                       
Query: 125 tcggtggtaactataggatggagatgaggtaggtgagaaacagggatggcagaggctgga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcggtggtaactataggatggagatgaggtaggtgagaaacagggatggcagaggctgga 384

                                                                       
Query: 185 gaaagcgagaagatatgcttgccgctatgaagaaaagatacctctgaaggagactggatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gaaagcgagaagatatgcttgccgctatgaagaaaagatacctctgaaggagactggatt 444

                                              
Query: 245 aaaattttggacccttatggtctagctacccctca 279
           |||||||||||||||||||||||||||||||||||
Sbjct: 445 aaaattttggacccttatggtctagctacccctca 479


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space:   180900
Effective search space used:   180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)