Query= MSMg01no499_j12.b1 MSMg01no499_j12.b1 CHROMAT_FILE:
MSMg01no499_j12.b1 PHD_FILE: MSMg01no499_j12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:00 2005
(240 letters)
>mm_chr15_86322499_86323139
Length = 641
Score = 373 bits (193), Expect = e-108
Identities = 234/253 (92%), Gaps = 13/253 (5%)
Strand = Plus / Minus
Query: 1 gccactgattaatagtacagccatcactagtgaggtggctggcaccccgaggatgtatga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 462 gccactgattaatagtacagccatcactagtgaggtggctggcaccccgaggatgcagga 403
Query: 61 atgtct----ca--g-----c-agtacagcttggaagaagaaacctgctgctgaacaaag 108
|||||| || | | ||||||||||||||||||||||||||||||||||||||
Sbjct: 402 atgtcttgtacattgtcttccaagtacagcttggaagaagaaacctgctgctgaacaaag 343
Query: 109 tccctgtctatgtgataggagaagtcatttagc-gaaaggctggggggtggggggcagac 167
|||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 342 tccctgtctatgcgataggagaagtcatttagcaggtaggctggggggtggggggcagac 283
Query: 168 agacagatggcatgtgtgtgctcatgtgtgtggaggccagaggatgatcttgggagttac 227
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 282 agacagatggcatgtgtgtgctcatgtgtgtggaggccagaggataatcttgggagttac 223
Query: 228 tctcacgagctgt 240
|||||||||||||
Sbjct: 222 tctcacgagctgt 210
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 641
Length adjustment: 9
Effective length of query: 231
Effective length of database: 632
Effective search space: 145992
Effective search space used: 145992
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no499_j12.g1 MSMg01no499_j12.g1 CHROMAT_FILE:
MSMg01no499_j12.g1 PHD_FILE: MSMg01no499_j12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:00 2005
(279 letters)
>mm_chr15_86187024_86187702
Length = 679
Score = 532 bits (275), Expect = e-155
Identities = 275/275 (100%)
Strand = Plus / Plus
Query: 5 gagagagagagagagagagagacagagagagacagagagagacagagacacaccaagtgc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gagagagagagagagagagagacagagagagacagagagagacagagacacaccaagtgc 264
Query: 65 aaaccatacagatgagaggtgggagagagggacagatatgagggacatgcagagggaggg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaaccatacagatgagaggtgggagagagggacagatatgagggacatgcagagggaggg 324
Query: 125 tcggtggtaactataggatggagatgaggtaggtgagaaacagggatggcagaggctgga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcggtggtaactataggatggagatgaggtaggtgagaaacagggatggcagaggctgga 384
Query: 185 gaaagcgagaagatatgcttgccgctatgaagaaaagatacctctgaaggagactggatt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gaaagcgagaagatatgcttgccgctatgaagaaaagatacctctgaaggagactggatt 444
Query: 245 aaaattttggacccttatggtctagctacccctca 279
|||||||||||||||||||||||||||||||||||
Sbjct: 445 aaaattttggacccttatggtctagctacccctca 479
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space: 180900
Effective search space used: 180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
