Query= MSMg01no500_i20.b1 MSMg01no500_i20.b1 CHROMAT_FILE:
MSMg01no500_i20.b1 PHD_FILE: MSMg01no500_i20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:12 2005
(636 letters)
>mm_chr15_58252707_58253738
Length = 1032
Score = 1203 bits (622), Expect = 0.0
Identities = 631/636 (99%), Gaps = 4/636 (0%)
Strand = Plus / Plus
Query: 1 ggtggacacagccctggcttcaatccataactcagaacaaaagcaaaaacaaaatcagaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggtggacacagccctggcttcaatccataactcagaacaaaagcaaaaacaaaatcagaa 260
Query: 61 aatgtttaaaagtttcccttgaaaactagtctggtctggctatcttatgaagtgatgtga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatgtttaaaagtttcccttgaaaactagtctggtctggctatcttatgaagtgatgtga 320
Query: 121 tcaagggtgtaagacttacagcttatatatgttgattttatactgtttcttgttttagta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcaagggtgtaagacttacagcttatatatgttgattttatactgtttcttgttttagta 380
Query: 181 agaattcttctctctctctatatgtcttaatttcgtctcacttatactatgaagactcac 240
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaattcttctctct----atatgtcttaatttcgtctcacttatactatgaagactcac 436
Query: 241 atttttttgtttgagataaagttgttgctttgttctaacagttgattgttcttgtctagt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 atttttttgtttgagataaagttgttgctttgttctaacagttgattgttcttgtctagt 496
Query: 301 ttgtatactgtttcaaagattaaaaggtatgtatttcaagctgtgtttatggtgaagctg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ttgtatactgtttcaaagattaaaaggtatgtatttcaagctgtgtttatggtgaagctg 556
Query: 361 taagaaacctgagaaaacgggatcttttcctattgcagttaaacatgtcaagaaagatga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 taagaaacctgagaaaacgggatcttttcctattgcagttaaacatgtcaagaaagatga 616
Query: 421 acgcaagtactatgaggagctgctcaagtacagtcgtgaccatctcatgctgtaccctta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 acgcaagtactatgaggagctgctcaagtacagtcgtgaccatctcatgctgtaccctta 676
Query: 481 ccacttatccgacatcatggtcaagggcctgaggataaccccattctcatactatgctgg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ccacttatccgacatcatggtcaagggcctgaggataaccccattctcatactatgctgg 736
Query: 541 gatcatggaggttagtgtctagtgggagagaaccattaactacccgctcggagctattgt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 737 gatcatggaggttagtgtctagtgggagagaaccattaactacccgctcggagctatcgt 796
Query: 601 tgatgttgtctatccagttaatgtgtaaatggaatg 636
||||||||||||||||||||||||||||||||||||
Sbjct: 797 tgatgttgtctatccagttaatgtgtaaatggaatg 832
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1032
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1022
Effective search space: 639772
Effective search space used: 639772
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no500_i20.g1 MSMg01no500_i20.g1 CHROMAT_FILE:
MSMg01no500_i20.g1 PHD_FILE: MSMg01no500_i20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:12 2005
(587 letters)
>mm_chr15_58416576_58417562
Length = 987
Score = 905 bits (468), Expect = 0.0
Identities = 525/566 (92%), Gaps = 36/566 (6%)
Strand = Plus / Minus
Query: 1 aaggagactgagtgatcatccagggcagtcacagtggcaacaggaaaatgcagataaaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aaggagactgagtgatcatccagggcagtcacagtggcaacaggaaaatgcagataaaga 506
Query: 61 aagccataaacacattgataaagataacgcgcatgctggatacctgtggaaaagcatttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aagccataaacacattgataaagataacgcgcatgctggatacctgtggaaaagcatttc 446
Query: 121 tccgatctagcggtaccttttccct-gacttgatttgacagcagctctttgttctaattt 179
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 445 tccgatctagcggtaccttttccctag-cttgatttgacagcagctctttgttctaattt 387
Query: 180 tgtacggtgccaggatacaccaaaatatttagcagagagtaacttcataccactctctag 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tgtacggtgccaggatacaccaaaatatttagcagagagtaacttcataccactctctag 327
Query: 240 tatttttagcacaggccctccggaaacgatttgctatttttaagacaaacctttctagtt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tatttttagcacaggccctccggaaacgatttgctatttttaagacaaacctttctagtt 267
Query: 300 tctgtagcactctttgaatggagaaggtgaaagaaagtctctgatatttgagatgaatga 359
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct: 266 tctgtagcactctttgaatggagaaggtaaaagaaagtctctgatatttgggatgaatga 207
Query: 360 cttaggttttatatatatatatatata--------------------------------- 386
|||||||| ||||||||||||||||||
Sbjct: 206 cttaggttatatatatatatatatatatatatatatatatatatatatatatatatatat 147
Query: 387 -gacttttttcacttatagtttcataggagcagatgtttaagaattattttacagacagg 445
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 tgacttttttcacttatagtttcataggagcagatgtttaagaattattttacagacagg 87
Query: 446 acagaaagaaataatcaaagtcactatgttagttccttctctcgccaatgtgccaaattc 505
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 86 acagaaagaaataagcaaagtcactgtgttagttccttctctcgccaatgtgccaaattc 27
Query: 506 ccagcaaaggcaacttcaagaaagga 531
||||||||||||||||||||||||||
Sbjct: 26 ccagcaaaggcaacttcaagaaagga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 57
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space: 563729
Effective search space used: 563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
