Query= MSMg01no502_b10.b1 MSMg01no502_b10.b1 CHROMAT_FILE:
MSMg01no502_b10.b1 PHD_FILE: MSMg01no502_b10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:02 2005
(619 letters)
>mm_chr15_27804281_27805299
Length = 1019
Score = 901 bits (466), Expect = 0.0
Identities = 537/576 (93%), Gaps = 30/576 (5%)
Strand = Plus / Minus
Query: 54 ccagttagtcaggtcctcagactgcagagaagaagagaaaagaaacaacaggtccttgag 113
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1019 ccagttagtcaggtcctcagactgcag---agaagagaaaagaaacaacaggtccttgag 963
Query: 114 gctgctttccccatgacatttcctgaaacttaagaagatgactatgtctttctgattgtg 173
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 962 gctgctttccccatgacatgtcctgaaacttaagaagatgactatgtctttctgattgtg 903
Query: 174 ttaccatcagcttagcctttctgagtccctt------tctcttaactgtaaagtgatatt 227
||||||||||||||| |||||||||| ||| |||||||||||||||||||||||
Sbjct: 902 ttaccatcagcttagtctttctgagt--ctttctgagtctcttaactgtaaagtgatatt 845
Query: 228 aatatctccctttaccaggttgttgtaagaatacattaaggagggagggagagagggaaa 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 aatatctccctttaccaggttgttgtaagaatacattaaggagggagggagagagggaaa 785
Query: 288 gagggagtcatgacagaaggtattcagaattccattccttgatttagaacatatagatgg 347
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 784 gagggagtcatgacagaaggtgttcagaattccattccttgatttagaacatatagatgg 725
Query: 348 ctggaaatacgaggttgacgatgacagtcctgtgacagtagctaggcacgtcaggaccta 407
| |||||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 724 c--------------tgacgatgacagtcctttgacagtagctaggcatgtcaggaccta 679
Query: 408 aagtagatgatgttgccagtatttatgctgtgcccaccttagtttattgaacacctacct 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 678 aagtagatgatgttgccagtatttatgctgtgcccaccttagtttattgaacacccacct 619
Query: 468 acccggagaaaataatggttgtttctggtcaaatgctaacagatgtaaacagtagttggt 527
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 618 acccggagaaaataatggttgtttctggtcaaatgctaacagatgtaaacagtagtcagt 559
Query: 528 gccctagttggggtcactattgctgtgatgaaagaccatgaccaaagcagtttgtgggat 587
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 558 gccctagttggggtcactattgctgtgatgaaagaccatgaccaaagcagtttg-gggag 500
Query: 588 gaaag-gg---tttggcttacacttccacagcactg 619
||||| || |||||||||||||||||||||||||
Sbjct: 499 gaaagaggttatttggcttacacttccacagcactg 464
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space: 614481
Effective search space used: 614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no502_b10.g1 MSMg01no502_b10.g1 CHROMAT_FILE:
MSMg01no502_b10.g1 PHD_FILE: MSMg01no502_b10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:02 2005
(655 letters)
>mm_chr15_27614806_27615860
Length = 1055
Score = 1135 bits (587), Expect = 0.0
Identities = 638/655 (97%)
Strand = Plus / Plus
Query: 1 agggactgaactccttcactgaacgtgcgagtaaaggcaatatcaggcttccagccaaga 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 agggactgaactccttcactgaacgtgggagtaaaggcaatatcaggcttccagccaaga 260
Query: 61 atcagtgaaaagtttcagcttaccctcacttccaactgtctcagccctaatcattgtctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcagtgaaaagtttcagcttaccctcacttccaactgtctcagccctaatcattgtctc 320
Query: 121 tgtggatgtggcaagacaggcagacatagaatgtcttattttgatgggctgccaagatgg 180
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 tgtggatgtggcaagacaggcagacatagaatgtcttattttgatgggccgccaagatgg 380
Query: 181 ctcagcagataaagacatttgctaccatgcctaagatctgagctggagagaccctactct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcagcagataaagacatttgctaccatgcctaagatctgagctggagagaccctactct 440
Query: 241 gtatgttgttgtctgccctccacacagggctctatgacacacctgtgcacacatatgcat 300
| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcaagctgttgtctgccctccacacagggctctatgacacacctgtgcacacatatgcat 500
Query: 301 gtgcatgcgtacacacaaaataatcaaataaatctaatcagaaacctttaaaaagtatct 360
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 501 gtgcatgcttacacacaaaataatcaaataaatctaattagaaacctttaaaaagtatct 560
Query: 361 atttgagtgccagtagggacatggttcactggcattcagaacattcatattgccccagtg 420
||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||
Sbjct: 561 atttgagtgccagtaggtatgtggttcactggcattcagaacattcatattgcccaagta 620
Query: 421 tggtgcaagccttcatcccagcactaggagagctaggcacacttctatgaattcgaggcc 480
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 621 tggtgcaagccttcatcccagcactaggagagctaggcacatttctatgagttcgaggcc 680
Query: 481 agcctggtctacgtagcaagttccaggccagctaaagctacagggtgagaccctgtctca 540
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 681 agcctggtctacgtagcaagttccagaccagctaaagctacagggtgagaccctgtctca 740
Query: 541 gaaaatgaaaagtaacattcacactgagatgcgcccatcaccaaccatctacttctagaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 741 gaaaatgaaaagtaacattcacactgagatgcgcccatcaccaaccatctatttctagaa 800
Query: 601 tgtctttcaccttctcacaaggaaagctgacacccactgaacactgacttcccat 655
||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tgtctttcatcttctcacaaggaaagctgacacccactgaacactgacttcccat 855
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space: 674025
Effective search space used: 674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
